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AT1G23860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RS-containing zinc finger protein 21
Curator
Summary (TAIR10)
Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing.
Computational
Description (TAIR10)
RS-containing zinc finger protein 21 (RSZP21); FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: serine/arginine-rich 22 (TAIR:AT4G31580.2); Has 6291 Blast hits to 5531 proteins in 385 species: Archae - 0; Bacteria - 201; Metazoa - 3437; Fungi - 488; Plants - 1566; Viruses - 48; Other Eukaryotes - 551 (source: NCBI BLink).
Protein Annotations
BioGrid:24235eggNOG:ENOG4111N8YeggNOG:KOG0107EMBL:AC002423EMBL:AF033587EMBL:AJ002377EMBL:AK317576
EMBL:CP002684EnsemblPlants:AT1G23860EnsemblPlants:AT1G23860.1EnsemblPlants:AT1G23860.2EnsemblPlants:AT1G23860.3EnsemblPlants:AT1G23860.4entrez:838997
ExpressionAtlas:O81127Gene3D:3.30.70.330Gene3D:4.10.60.10GeneID:838997Genevisible:O81127GO:GO:0000166GO:GO:0000398
GO:GO:0003676GO:GO:0005681GO:GO:0008270GO:GO:0016607hmmpanther:PTHR24012HOGENOM:HOG000276234InParanoid:O81127
IntAct:O81127InterPro:IPR000504InterPro:IPR001878InterPro:IPR012677iPTMnet:O81127KEGG:ath:AT1G23860KO:K12896
OMA:RHRNGDHPaxDb:O81127Pfam:O81127Pfam:PF00076Pfam:PF00098Pfscan:PS50102Pfscan:PS50158
PhylomeDB:O81127PIR:A86373PIR:T51584PIR:T52628PRIDE:O81127PRO:PR:O81127PROSITE:PS50102
PROSITE:PS50158ProteinModelPortal:O81127Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72165Reactome:R-ATH-72187RefSeq:NP_001117342.1
RefSeq:NP_001185074.1RefSeq:NP_564208.1RefSeq:NP_973901.1SMART:SM00343SMART:SM00360SMR:O81127STRING:3702.AT1G23860.1
SUPFAM:SSF54928SUPFAM:SSF57756TAIR:AT1G23860tair10-symbols:At-RSZ21tair10-symbols:RSZ21tair10-symbols:RSZP21tair10-symbols:SRZ-21
tair10-symbols:SRZ21UniGene:At.22803UniProt:O81127
Coordinates (TAIR10) chr1:-:8428091..8429164
Molecular Weight (calculated) 21538.30 Da
IEP (calculated) 11.83
GRAVY (calculated) -1.35
Length 187 amino acids
Sequence (TAIR10)
(BLAST)
001: MTRVYVGNLD PRVTERELED EFKAFGVLRN VWVARRPPGY AFLEFDDERD ALDAISALDR KNGWRVELSH KDKGGRGGGG GRRGGIEDSK CYECGELGHF
101: ARECRRGRGS VRRRSPSPRR RRSPDYGYAR RSISPRGRRS PPRRRSVTPP RRGRSYSRSP PYRGSRRDSP RRRDSPYGRR SPYANGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)