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AT1G23840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.962
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23850.1); Has 53 Blast hits to 48 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JAXIeggNOG:ENOG411179YEMBL:AC005990EMBL:AY037188EMBL:AY142035EMBL:CP002684EnsemblPlants:AT1G23840
EnsemblPlants:AT1G23840.1entrez:838995GeneID:838995GO:GO:0016021Gramene:AT1G23840.1hmmpanther:PTHR36714HOGENOM:HOG000153084
KEGG:ath:AT1G23840OMA:YYKCSESPhylomeDB:Q9ZUB1PIR:H86372Proteomes:UP000006548RefSeq:NP_564206.1STRING:3702.AT1G23840.1
TAIR:AT1G23840TMHMM:TMhelixUniGene:At.10950UniProt:Q9ZUB1
Coordinates (TAIR10) chr1:-:8424321..8425337
Molecular Weight (calculated) 37893.60 Da
IEP (calculated) 4.98
GRAVY (calculated) 0.61
Length 338 amino acids
Sequence (TAIR10)
(BLAST)
001: METKSEEKLS VIELLKRALK LLFGNINLAL FLFLCSLPLF CFLIFFELSL QTTVSLASTY ISKLVNSEED LSENDLLPWL IQTTLLYFFP YTILDLLTTT
101: TIVAASSIAY TSEEEPLGLL YLVGRSFKLC QNKVGGCLIT SLYVLLLSTS VFLGLFSGST IYLYFASLTL EQQIFFNQAV VQDQRFLEQA VVLLDVVVVL
201: IHGTVFIVLA AKFSKWSAGW NISMVVSVLE EEEDSKGIYG SSALSLSAWY LRGQEKRDFW MMLVFLVGAL VTRMPCLYYK CSESLSGNGV LYTGLYVSLI
301: CVGNVVKWVS CVVWYHDCNT RVLRKKGDVE IGSKAFAT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)