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AT1G23830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.919
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23840.1); Has 57 Blast hits to 52 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JEJIeggNOG:ENOG4111ANPEMBL:AC005990EMBL:AY058100EMBL:AY098950EMBL:CP002684EnsemblPlants:AT1G23830
EnsemblPlants:AT1G23830.1entrez:838994GeneID:838994GO:GO:0016021Gramene:AT1G23830.1hmmpanther:PTHR36714HOGENOM:HOG000153084
KEGG:ath:AT1G23830OMA:PYLSREYPhylomeDB:Q9ZUB2PIR:G86372Proteomes:UP000006548RefSeq:NP_564205.1TAIR:AT1G23830
TMHMM:TMhelixUniGene:At.10951UniGene:At.22492UniProt:Q9ZUB2
Coordinates (TAIR10) chr1:-:8423003..8424040
Molecular Weight (calculated) 39413.90 Da
IEP (calculated) 7.55
GRAVY (calculated) 0.52
Length 345 amino acids
Sequence (TAIR10)
(BLAST)
001: METNSEEKLS VIELLKRALK LLFGNINLLL FLCLCSLPLF FFLIFFELSL QTTVYLTSQF LWKLLILGED LPENDLILIS EKKNDLISWL IQTFLLYFFP
101: YTILDLLTTT TIVAASSIVY TSKEEPLGLL YLVERSIKIC QNRVGGCLIT SLYVLLWSTS VFLFFFLFFF LQFLSGSTNY VSIPYLSREY KGFHYQPTGL
201: FNVVVPLTLL MQCTLFIVLT AKYSKWSSGW NMGLVVSVLE EDEDGQGIYG GDALSLSGWY RKGHEKRDLW LMLMFLVFGL ATRMPCLYSK CSASGNGVMY
301: TGFYVGLICV GNLLKWVTCL ACYHDCKTMV LRKKRDVEQA KTPAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)