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AT1G23760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : BURP domain-containing protein
Curator
Summary (TAIR10)
Encodes aromatic rich glycoprotein JP630.
Computational
Description (TAIR10)
JP630; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: polygalacturonase 2 (TAIR:AT1G70370.2); Has 1783 Blast hits to 1423 proteins in 248 species: Archae - 0; Bacteria - 362; Metazoa - 287; Fungi - 197; Plants - 556; Viruses - 4; Other Eukaryotes - 377 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK7ReggNOG:ENOG410YDACEMBL:AC005990EMBL:CP002684
EMBL:U59467EnsemblPlants:AT1G23760EnsemblPlants:AT1G23760.1entrez:838987
GeneID:838987Genevisible:P92982GO:GO:0005618GO:GO:0048046
Gramene:AT1G23760.1hmmpanther:PTHR31458hmmpanther:PTHR31458:SF3HOGENOM:HOG000082581
InParanoid:P92982InterPro:IPR004873iPTMnet:P92982KEGG:ath:AT1G23760
OMA:HEDKFTGPaxDb:P92982Pfam:P92982Pfam:PF03181
Pfscan:PS51277PhylomeDB:P92982PIR:G86371PRIDE:P92982
PRO:PR:P92982PROSITE:PS51277ProteinModelPortal:P92982Proteomes:UP000006548
RefSeq:NP_173788.1SMART:SM01045STRING:3702.AT1G23760.1TAIR:AT1G23760
tair10-symbols:JP630tair10-symbols:PG3UniGene:At.24878UniProt:P92982
Coordinates (TAIR10) chr1:+:8402142..8404147
Molecular Weight (calculated) 68232.30 Da
IEP (calculated) 8.84
GRAVY (calculated) -0.55
Length 622 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKQFVFLLP FLSRLYHVVI AGGERLTNGG FSPEINPFTP KASLVRYWNK QIHHQSPGSA FLLSKASPLT AVASATFAKL ASENALPDRL PDFCSAANLF
101: CFPDLGPTLE KHSNDVKFSV YDQRNFTNYG TIHPGGADSF KKYSQNGNAV TDSFRRYSRD AAGHEDKFTG YADNSNVVEE KFNSYGTSAT GGSGDFKNYQ
201: SGVNNPTTRF KAYSDEGNGR AQTFKTYTHE ANSGPGQSFT SYGKNGNGAP NEFSSYGVSS NVIGSDFSNY GENGNAANDT FKGYGGDGNV PQNNFKSYGA
301: SGNAAVDTFL NYRDNANVGD DSFSSYAKNS NFEKVDFVNY GKSINPGSES FSGYGKGAEG NKIDFKTYTQ NSTFKDYTKT GVEFAKYNRS SLGGGKTVNK
401: WVEPGKFFRE SMLKEGTLIW MPDIKDKMPK RSFLPRSIVS KLPFSTSKIA EIKRVFHAND NSTMEGIITD AVRECERPPT VSETKRCVGS AEDMIDFATS
501: VLGRSVVLRT TESVAGSKEK VMIGKVNGIN GGRVTKSVSC HQSLYPYLLY YCHSVPKVRV YESDLLDPKS KAKINHGIAI CHMDTSAWGA NHGAFMLLGS
601: RPGQIEVCHW IFENDMNWAI AD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)