suba logo
AT1G23740.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Oxidoreductase, zinc-binding dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: response to cold; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Quinone oxidoreductase/zeta-crystallin, conserved site (InterPro:IPR002364), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT4G13010.1); Has 40144 Blast hits to 39997 proteins in 2741 species: Archae - 622; Bacteria - 25898; Metazoa - 1494; Fungi - 3833; Plants - 1284; Viruses - 3; Other Eukaryotes - 7010 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G23740-MONOMERBioCyc:MetaCyc:AT1G23740-MONOMEREC:1.-.-.-eggNOG:COG0604eggNOG:KOG1198EMBL:AC005990EMBL:AF411799
EMBL:AY094032EMBL:CP002684EnsemblPlants:AT1G23740EnsemblPlants:AT1G23740.1entrez:838984Gene3D:3.40.50.720Gene3D:3.90.180.10
GeneID:838984Genevisible:Q9ZUC1GO:GO:0008270GO:GO:0009409GO:GO:0009507GO:GO:0009570GO:GO:0009579
GO:GO:0009941GO:GO:0010319GO:GO:0035671GO:GO:0035798GO:GO:0048046GO:GO:0055114Gramene:AT1G23740.1
gramene_plant_reactome:1119309gramene_plant_reactome:6873988hmmpanther:PTHR11695hmmpanther:PTHR11695:SF552HOGENOM:HOG000294678InParanoid:Q9ZUC1InterPro:IPR002085
InterPro:IPR002364InterPro:IPR011032InterPro:IPR013154InterPro:IPR016040InterPro:IPR020843iPTMnet:Q9ZUC1KEGG:ath:AT1G23740
KO:K18980OMA:TPEINEYPANTHER:PTHR11695PaxDb:Q9ZUC1Pfam:PF08240Pfam:PF13602Pfam:Q9ZUC1
PhylomeDB:Q9ZUC1PIR:E86371PRIDE:Q9ZUC1PRO:PR:Q9ZUC1PROSITE:PS01162ProteinModelPortal:Q9ZUC1Proteomes:UP000006548
RefSeq:NP_173786.1scanprosite:PS01162SMART:SM00829SMR:Q9ZUC1STRING:3702.AT1G23740.1SUPFAM:SSF50129SUPFAM:SSF51735
SWISS-2DPAGE:Q9ZUC1TAIR:AT1G23740UniGene:At.22964UniGene:At.71159UniProt:Q9ZUC1
Coordinates (TAIR10) chr1:-:8398245..8399656
Molecular Weight (calculated) 40988.50 Da
IEP (calculated) 8.66
GRAVY (calculated) 0.04
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MNAALATTTA TTPVLRRETP LLHYCSLTTK SPVYQINRVR FGSCVQTVSK KFLKISASSQ SASAAVNVTA DASIPKEMKA WVYSDYGGVD VLKLESNIVV
101: PEIKEDQVLI KVVAAALNPV DAKRRQGKFK ATDSPLPTVP GYDVAGVVVK VGSAVKDLKE GDEVYANVSE KALEGPKQFG SLAEYTAVEE KLLALKPKNI
201: DFAQAAGLPL AIETADEGLV RTEFSAGKSI LVLNGAGGVG SLVIQLAKHV YGASKVAATA STEKLELVRS LGADLAIDYT KENIEDLPDK YDVVFDAIGM
301: CDKAVKVIKE GGKVVALTGA VTPPGFRFVV TSNGDVLKKL NPYIESGKVK PVVDPKGPFP FSRVADAFSY LETNHATGKV VVYPIP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)