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AT1G23550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : similar to RCD one 2
Curator
Summary (TAIR10)
Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.
Computational
Description (TAIR10)
similar to RCD one 2 (SRO2); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317), RST domain of plant C-terminal (InterPro:IPR022003); BEST Arabidopsis thaliana protein match is: similar to RCD one 3 (TAIR:AT1G70440.1); Has 178 Blast hits to 169 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYKTeggNOG:ENOG4111NY1EMBL:AC005990EMBL:AC007945EMBL:BT022003EMBL:CP002684EnsemblPlants:AT1G23550
EnsemblPlants:AT1G23550.1entrez:838965Gene3D:3.90.228.10GeneID:838965Genevisible:Q9ZUD9GO:GO:0003950GO:GO:0005634
GO:GO:0007275Gramene:AT1G23550.1hmmpanther:PTHR32263hmmpanther:PTHR32263:SF8HOGENOM:HOG000090718InParanoid:Q9ZUD9InterPro:IPR012317
InterPro:IPR022003KEGG:ath:AT1G23550OMA:ITTRAKFPaxDb:Q9ZUD9Pfam:PF12174Pfam:Q9ZUD9Pfscan:PS51059
PhylomeDB:Q9ZUD9PIR:C86369PRIDE:Q9ZUD9PRO:PR:Q9ZUD9PROSITE:PS51059ProteinModelPortal:Q9ZUD9Proteomes:UP000006548
RefSeq:NP_173769.1STRING:3702.AT1G23550.1SUPFAM:SSF56399TAIR:AT1G23550tair10-symbols:SRO2UniGene:At.41541UniGene:At.49909
UniProt:Q9ZUD9
Coordinates (TAIR10) chr1:+:8350912..8352232
Molecular Weight (calculated) 35604.20 Da
IEP (calculated) 8.21
GRAVY (calculated) -0.30
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAQVEIEDQ TSVTNLDNGE IFDSISDDAD SSVSHAGSSF SSSSLILLGE GNPEHDVIKT CLLSGMGVVS SDTTIVTISK NSSERGITTR AKFLAFRIFT
101: DAVARKHGGD ANVKYGWYAG SRDEIQRIIS YGFSNRDVGK FENDGGSHGI GIHLVPSKCS LLAASATEQD EEGLRYLLLC RVILGKPEII ISGSKQSYPS
201: SAEFDSGVDD LHNPRNYVIW SCNMNSCILP SYIVSFRSPR LRVSRGGFAS RPSSPWVSFA SLMSMLSTSM DPSRMNLIIR TYDDFRKRKI RRDQLVRKMR
301: EVAGDNLLAE IIKNHKNRNK VTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)