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AT1G23410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22430844 (2012): Golgi
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:18998720 (2009): extracellular region
  • PMID:17317660 (2007): plasma membrane
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At1g23410
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein S27a / Ubiquitin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S27a / Ubiquitin family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process, translation; LOCATED IN: cytosolic small ribosomal subunit, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 6 (TAIR:AT2G47110.2); Has 12704 Blast hits to 7404 proteins in 782 species: Archae - 114; Bacteria - 22; Metazoa - 5540; Fungi - 1414; Plants - 3101; Viruses - 186; Other Eukaryotes - 2327 (source: NCBI BLink).
Protein Annotations
BioGrid:24188eggNOG:COG1998eggNOG:ENOG410ITMZEMBL:AC005292EMBL:AC007945EMBL:AY085389EMBL:BT024763
EMBL:CP002684EnsemblPlants:AT1G23410EnsemblPlants:AT1G23410.1entrez:838949GeneID:838949Genevisible:P59271GO:GO:0003735
GO:GO:0005634GO:GO:0005794GO:GO:0005886GO:GO:0006412GO:GO:0009506GO:GO:0022627GO:GO:0046872
Gramene:AT1G23410.1hmmpanther:PTHR10666InParanoid:P59271IntAct:P59271InterPro:IPR000626InterPro:IPR002906InterPro:IPR011332
InterPro:IPR019954InterPro:IPR019956InterPro:IPR029071iPTMnet:P59271KEGG:ath:AT1G23410KO:K02977OMA:HIFEDDE
PaxDb:P59271Pfam:P59271Pfam:PF00240Pfam:PF01599Pfscan:PS50053PIR:H86367PRIDE:P59271
PRINTS:PR00348PRO:PR:P59271PROSITE:PS00299PROSITE:PS50053ProteinModelPortal:P59271Proteomes:UP000006548Reactome:R-ATH-110312
Reactome:R-ATH-110314Reactome:R-ATH-110320Reactome:R-ATH-156827Reactome:R-ATH-174184Reactome:R-ATH-179409Reactome:R-ATH-1799339Reactome:R-ATH-349425
Reactome:R-ATH-450302Reactome:R-ATH-450321Reactome:R-ATH-5358346Reactome:R-ATH-5632684Reactome:R-ATH-5655862Reactome:R-ATH-5656121Reactome:R-ATH-5656169
Reactome:R-ATH-5696394Reactome:R-ATH-5696395Reactome:R-ATH-5696397Reactome:R-ATH-5696400Reactome:R-ATH-6781823Reactome:R-ATH-6782135Reactome:R-ATH-6782210
Reactome:R-ATH-68949Reactome:R-ATH-69017Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706Reactome:R-ATH-917729
Reactome:R-ATH-975956Reactome:R-ATH-975957Reactome:R-ATH-983168RefSeq:NP_173755.1scanprosite:PS00299SMART:SM00213SMART:SM01402
SMR:P59271STRING:3702.AT1G23410.1SUPFAM:SSF54236SUPFAM:SSF57829TAIR:AT1G23410UniGene:At.41552UniProt:P59271
Coordinates (TAIR10) chr1:+:8314940..8315410
Molecular Weight (calculated) 17672.60 Da
IEP (calculated) 10.42
GRAVY (calculated) -0.71
Length 156 amino acids
Sequence (TAIR10)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHTHKKVKL
101: AVLQFYKVDG SGKVQRLKKE CPSVSCGPGT FMASHFDRHY CGKCGTTYVF KKADEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)