suba logo
AT1G23400.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding CRS1 / YhbY (CRM) domain-containing protein
Curator
Summary (TAIR10)
Promotes the splicing of chloroplast group II introns.
Computational
Description (TAIR10)
CAF2; FUNCTIONS IN: RNA binding; INVOLVED IN: Group II intron splicing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain-containing protein (TAIR:AT2G20020.1); Has 265 Blast hits to 223 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 261; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEAAeggNOG:ENOG410XQZ0EMBL:AC005292EMBL:AC007945EMBL:AY062732EMBL:AY114649EMBL:CP002684
EnsemblPlants:AT1G23400EnsemblPlants:AT1G23400.1entrez:838948Gene3D:3.30.110.60GeneID:838948Genevisible:Q9LDA9GO:GO:0000373
GO:GO:0003723GO:GO:0006397GO:GO:0009570GO:GO:0030529Gramene:AT1G23400.1hmmpanther:PTHR31846hmmpanther:PTHR31846:SF5
HOGENOM:HOG000237818InParanoid:Q9LDA9InterPro:IPR001890KEGG:ath:AT1G23400OMA:VVFLYRGPaxDb:Q9LDA9Pfam:PF01985
Pfam:Q9LDA9Pfscan:PS51295PhylomeDB:Q9LDA9PRIDE:Q9LDA9PRO:PR:Q9LDA9PROSITE:PS51295ProteinModelPortal:Q9LDA9
Proteomes:UP000006548RefSeq:NP_173754.2SMART:SM01103SMR:Q9LDA9STRING:3702.AT1G23400.1SUPFAM:SSF75471TAIR:AT1G23400
tair10-symbols:ATCAF2tair10-symbols:CAF2UniGene:At.26886UniProt:Q9LDA9
Coordinates (TAIR10) chr1:-:8312199..8314740
Molecular Weight (calculated) 63605.20 Da
IEP (calculated) 8.57
GRAVY (calculated) -0.63
Length 564 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIVASLRDI NLFSSLPSTP PMADSSSGTF RPAPPIPIPK YAPSNRNRNQ KTNHQTDTNP KKPQSNPALK LPHHRTRYYK PVKEGVISSD GDRTILIGDS
101: GVSYQLPGAP FEFQFSYSET PKVKPVGIRE PAFMPFAPPT MPRPWTGKAP LKKSKKKIPL FDSFNPPPAG KSGVKYVEMP GPLPFGRYPK EGMNREEVLG
201: EPLKRWEKGM LIKPHMHDNR QVNLGRDGFT HNMLELIHSH WKRRRVCKVR CKGVPTVDMN NVCRVLEEKT GGEIIHRVGG VVYLFRGRNY NYRTRPQYPL
301: MLWKPAAPVY PKLIQEVPEG LTKEEAHEFR VKGKSLRPIC KLSKNGVYVS LVKDVRDAFE LSSLVKVDCP GLEPSDYKKI GAKLKELVPC VLLSFDDEQI
401: LMWRGREWKS RFVDNPLIPS LSETNTTNEL DPSDKPSEEQ TVANPSTTIS SPKMISLWQR ALESSKAVIL EELDLGPDDL LKKVEELEGT SLAAEHTYTA
501: MVLSNTDGAA EDYVDEKDRS EEYYSDIDDD FDDECSDDES LDPVGPVGSL PVDKIVRKLR ERLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)