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AT1G23380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : KNOTTED1-like homeobox gene 6
Curator
Summary (TAIR10)
homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants.
Computational
Description (TAIR10)
KNOTTED1-like homeobox gene 6 (KNAT6); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: meristem maintenance; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), KNOX1 (InterPro:IPR005540), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED-like from Arabidopsis thaliana 2 (TAIR:AT1G70510.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioGrid:24185eggNOG:ENOG410XPMQeggNOG:KOG0773EMBL:AB072361EMBL:AB072362EMBL:AC005292EMBL:AC007945
EMBL:BT002930EMBL:BT004370EMBL:CP002684EnsemblPlants:AT1G23380EnsemblPlants:AT1G23380.1entrez:838946Gene3D:1.10.10.60
GeneID:838946Genevisible:Q84JS6GO:GO:0003700GO:GO:0005634GO:GO:0006355GO:GO:0010073GO:GO:0043565
hmmpanther:PTHR11850hmmpanther:PTHR11850:SF99HOGENOM:HOG000272741InParanoid:Q84JS6IntAct:Q84JS6InterPro:IPR001356InterPro:IPR005539
InterPro:IPR005540InterPro:IPR005541InterPro:IPR008422InterPro:IPR009057InterPro:IPR017970iPTMnet:Q84JS6KEGG:ath:AT1G23380
OMA:LMMSPESPaxDb:Q84JS6Pfam:PF03789Pfam:PF03790Pfam:PF03791Pfam:PF05920Pfam:Q84JS6
Pfscan:PS50071Pfscan:PS51213PhylomeDB:Q84JS6PRIDE:Q84JS6PRO:PR:Q84JS6PROSITE:PS00027PROSITE:PS50071
PROSITE:PS51213ProteinModelPortal:Q84JS6Proteomes:UP000006548RefSeq:NP_173752.3RefSeq:NP_850951.2scanprosite:PS00027SMART:SM00389
SMART:SM01188SMART:SM01255SMART:SM01256SMR:Q84JS6STRING:3702.AT1G23380.2SUPFAM:SSF46689TAIR:AT1G23380
tair10-symbols:KNAT6tair10-symbols:KNAT6Ltair10-symbols:KNAT6SUniGene:At.26286UniProt:Q84JS6
Coordinates (TAIR10) chr1:-:8297499..8302492
Molecular Weight (calculated) 36935.50 Da
IEP (calculated) 4.62
GRAVY (calculated) -0.52
Length 327 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)