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AT1G23310.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27177187 (2016): nucleus
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24130194 (2013): peroxisome
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23444301 (2013): mitochondrion mitochondrial matrix
  • PMID:23444301 (2013): mitochondrion
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19329564 (2009): peroxisome
  • PMID:18931141 (2008): peroxisome
  • PMID:17951448 (2007): peroxisome
  • PMID:15028209 (2004): plastid
  • PMID:12154131 (2002): peroxisome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : glutamate:glyoxylate aminotransferase
Curator
Summary (TAIR10)
Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway.
Computational
Description (TAIR10)
glutamate:glyoxylate aminotransferase (GGT1); FUNCTIONS IN: glycine:2-oxoglutarate aminotransferase activity, L-alanine:2-oxoglutarate aminotransferase activity, alanine-glyoxylate transaminase activity; INVOLVED IN: photorespiration; LOCATED IN: apoplast, peroxisome, chloroplast, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: alanine-2-oxoglutarate aminotransferase 2 (TAIR:AT1G70580.4); Has 27976 Blast hits to 27968 proteins in 2949 species: Archae - 777; Bacteria - 19095; Metazoa - 617; Fungi - 736; Plants - 1276; Viruses - 0; Other Eukaryotes - 5475 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT1G23310-MONOMERBioGrid:24179BRENDA:2.3.2.2EC:2.6.1.-
EC:2.6.1.2EC:2.6.1.4EC:2.6.1.44eggNOG:COG0436
eggNOG:KOG0258EMBL:AC005292EMBL:AF360195EMBL:AF479639
EMBL:AK316871EMBL:AY042902EMBL:AY056379EMBL:AY058868
EMBL:AY150373EMBL:BT002643EMBL:CP002684EnsemblPlants:AT1G23310
EnsemblPlants:AT1G23310.1entrez:838940Gene3D:3.40.640.10Gene3D:3.90.1150.10
GeneID:838940Genevisible:Q9LR30GO:GO:0001666GO:GO:0004021
GO:GO:0005773GO:GO:0005777GO:GO:0006545GO:GO:0008453
GO:GO:0009507GO:GO:0009853GO:GO:0016020GO:GO:0030170
GO:GO:0042853GO:GO:0047958GO:GO:0048046gramene_pathway:2.6.1.2
gramene_pathway:2.6.1.4gramene_pathway:ALANINE-DEG3-PWYgramene_pathway:ALANINE-SYN2-PWYgramene_pathway:GLYSYN2-PWY
gramene_pathway:PWY-181gramene_plant_reactome:1119330gramene_plant_reactome:6873456hmmpanther:PTHR11751
hmmpanther:PTHR11751:SF373HOGENOM:HOG000215020InParanoid:Q9LR30IntAct:Q9LR30
InterPro:IPR004839InterPro:IPR015421InterPro:IPR015422InterPro:IPR015424
iPTMnet:Q9LR30KEGG:ath:AT1G23310KO:K14272OMA:HRGYSRM
PaxDb:Q9LR30Pfam:PF00155Pfam:Q9LR30PhylomeDB:Q9LR30
PIR:B86367PRIDE:Q9LR30PRO:PR:Q9LR30ProMEX:Q9LR30
ProteinModelPortal:Q9LR30Proteomes:UP000006548Reactome:R-ATH-70614RefSeq:NP_001031083.1
RefSeq:NP_564192.2SABIO-RK:Q9LR30SMR:Q9LR30STRING:3702.AT1G23310.1
SUPFAM:SSF53383TAIR:AT1G23310tair10-symbols:AOAT1tair10-symbols:GGAT1
tair10-symbols:GGT1UniGene:At.24749UniPathway:UPA00288UniPathway:UPA00322
UniPathway:UPA00528UniProt:Q9LR30
Coordinates (TAIR10) chr1:-:8268720..8271329
Molecular Weight (calculated) 53304.30 Da
IEP (calculated) 6.88
GRAVY (calculated) -0.18
Length 481 amino acids
Sequence (TAIR10)
(BLAST)
001: MALKALDYDT LNENVKKCQY AVRGELYLRA SELQKEGKKI IFTNVGNPHA LGQKPLTFPR QVVALCQAPF LLDDPNVGML FPADAIARAK HYLSLTSGGL
101: GAYSDSRGLP GVRKEVAEFI QRRDGYPSDP ELIFLTDGAS KGVMQILNCV IRGNGDGILV PVPQYPLYSA TISLLGGTLV PYYLDESENW GLDVANLRQS
201: VAQARSQGIT VRAMVIINPG NPTGQCLSEA NIREILKFCY NEKLVLLGDE VYQQNIYQDE RPFISSKKVL MEMGSPFSKE VQLVSFHTVS KGYWGECGQR
301: GGYFEMTNLP PRVVEEIYKV ASIALSPNVS AQIFMGLMVN PPKPGDISYD QFARESKGIL ESLRRRARLM TDGFNSCKNV VCNFTEGAMY SFPQIRLPTG
401: ALQAAKQAGK VPDVFYCLKL LEATGISTVP GSGFGQKEGV FHLRTTILPA EDEMPEIMDS FKKFNDEFMT QYDNNFGYSK M
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)