AT1G23300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.540 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MATE efflux family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G26590.1); Has 9654 Blast hits to 9598 proteins in 1955 species: Archae - 179; Bacteria - 6865; Metazoa - 142; Fungi - 320; Plants - 1342; Viruses - 0; Other Eukaryotes - 806 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:8263827..8266048 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56365.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.24 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.49 | ||||||||||||||||||||||||||||||||||||
| Length | 515 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METLNVDHED TISSEQEHRA HTKSDTDMPP ISGGRDFIRQ FAAESKKLWW LAGPAIFTSF CQYSLGAVTQ ILAGHVNTLA LAAVSIQNSV ISGFSVGIML 101: GMGSALATLC GQAYGAGQLE MMGIYLQRSW IILNSCALLL CLFYVFATPL LSLLGQSPEI SKAAGKFSLW MIPQLFAYAV NFATAKFLQA QSKVIAMAVI 201: AATVLLQHTL LSWLLMLKLR WGMAGGAVVL NMSWWLIDVT QIVYICGGSS GRAWSGLSWM AFKNLRGFAR LSLASAVMVC LEVWYFMALI LFAGYLKNPQ 301: VSVAALSICM NILGWPIMVA FGFNAAVSVR ESNELGAEHP RRAKFLLIVA MITSVSIGIV ISVTLIVLRD KYPAMFSDDE EVRVLVKQLT PLLALTIVIN 401: NIQPVLSGVA VGAGWQGIVA YVNIGCYYLC GIPIGLVLGY KMELGVKGIW TGMLTGTVVQ TSVLLFIIYR TNWKKEASLA EARIKKWGDQ SNKREEIDLC 501: EEDENNSNGE NNHRK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)