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AT1G23280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MAK16 protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MAK16 protein-related; CONTAINS InterPro DOMAIN/s: Mak16 protein (InterPro:IPR006958); Has 4868 Blast hits to 3538 proteins in 334 species: Archae - 9; Bacteria - 248; Metazoa - 1831; Fungi - 653; Plants - 272; Viruses - 128; Other Eukaryotes - 1727 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5129eggNOG:KOG3064EMBL:CP002684EnsemblPlants:AT1G23280EnsemblPlants:AT1G23280.1entrez:838937GeneID:838937
Gramene:AT1G23280.1hmmpanther:PTHR23405hmmpanther:PTHR23405:SF4InParanoid:F4I4Q1InterPro:IPR006958InterPro:IPR029004iPTMnet:F4I4Q1
KEGG:ath:AT1G23280KO:K14831ncoils:CoilOMA:VEYEHEMPaxDb:F4I4Q1Pfam:PF01778Pfam:PF04874
PIRSF:PIRSF003352PRIDE:F4I4Q1ProteinModelPortal:F4I4Q1Proteomes:UP000006548RefSeq:NP_173742.1STRING:3702.AT1G23280.1SwissPalm:F4I4Q1
TAIR:AT1G23280UniGene:At.41558UniProt:F4I4Q1
Coordinates (TAIR10) chr1:-:8260865..8262650
Molecular Weight (calculated) 35761.50 Da
IEP (calculated) 5.55
GRAVY (calculated) -0.94
Length 303 amino acids
Sequence (TAIR10)
(BLAST)
001: MQHDEVIWQV IRHKHCSYMA KIETGIFCRN QYNVTGICNR SSCPLANSRY ATIRDHDGVF YLYMKTIERA HMPNKLWERV KLPVNYEKAL EMIDKHLLYW
101: PKLLQHKVKQ RLTKMTQMRI RMRKLALKTR EVVVTTPRRQ IKRESRREEK AIKAAQLDKA IETELMERLK KGIYPTEIYN LSDSVFNKLL DREIETNDEV
201: EKEEEEEGVI EYVEGDDELE AEEEEDMEDF SGLPSKESYL EGDDHDSDDE DDDDAEEQVV IHKKGRALKK SDDNGKAKKK PRVVVEVEQE DADTRRSLKS
301: LKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)