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AT1G23140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-dependent lipid-binding (CaLB domain) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G70810.1); Has 2565 Blast hits to 2253 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 1331; Fungi - 318; Plants - 674; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410INT2eggNOG:ENOG410ZKPXEMBL:AC002311EMBL:BT043489
EMBL:CP002684EnsemblPlants:AT1G23140EnsemblPlants:AT1G23140.1entrez:838922
Gene3D:2.60.40.150GeneID:838922Genevisible:O49303GO:GO:0005096
GO:GO:0005543GO:GO:0005634GO:GO:0005886GO:GO:0009738
GO:GO:0009789GO:GO:0043547GO:GO:0046872GO:GO:0048046
Gramene:AT1G23140.1hmmpanther:PTHR23180hmmpanther:PTHR23180:SF285HOGENOM:HOG000238659
InParanoid:O49303InterPro:IPR000008KEGG:ath:AT1G23140OMA:FVVVTMG
PaxDb:O49303Pfam:PF00168Pfscan:PS50004PhylomeDB:O49303
PIR:F86365PRIDE:O49303PRO:PR:O49303PROSITE:PS50004
ProteinModelPortal:O49303Proteomes:UP000006548RefSeq:NP_173727.1SMART:SM00239
SMR:O49303STRING:3702.AT1G23140.1SUPFAM:SSF49562TAIR:AT1G23140
UniGene:At.49306UniProt:O49303
Coordinates (TAIR10) chr1:-:8202362..8203172
Molecular Weight (calculated) 18569.90 Da
IEP (calculated) 4.23
GRAVY (calculated) -0.44
Length 165 amino acids
Sequence (TAIR10)
(BLAST)
001: MENLVGLLRI RVKRGINLVS RDSNTSDPFV VVTMGSQKLK TRGVENSCNP EWDDELTLGI NDPNQHVTLE VYDKDTFTSH DPMGDAEIDI KPFFEVQGTD
101: IQELTNGTEI RRVKPSGDNC LAEESRIIFS NGKILQDMIL QLRNVESGEV EIQIEWINVT GSSDF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)