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AT1G23130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polyketide cyclase/dehydrase and lipid transport superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP-like protein 31 (TAIR:AT1G70840.1); Has 372 Blast hits to 341 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 372; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVA3eggNOG:ENOG411063GEMBL:AC002311EMBL:AY039523EMBL:AY052730EMBL:CP002684EnsemblPlants:AT1G23130
EnsemblPlants:AT1G23130.1entrez:838921Gene3D:3.30.530.20GeneID:838921GO:GO:0006952GO:GO:0009607Gramene:AT1G23130.1
hmmpanther:PTHR31907hmmpanther:PTHR31907:SF4HOGENOM:HOG000239987InterPro:IPR000916InterPro:IPR023393KEGG:ath:AT1G23130OMA:MELCINI
Pfam:PF00407PhylomeDB:O49304PIR:E86365Proteomes:UP000006548RefSeq:NP_564190.1SMART:SM01037SMR:O49304
STRING:3702.AT1G23130.1SUPFAM:SSF55961TAIR:AT1G23130UniGene:At.23930UniProt:O49304
Coordinates (TAIR10) chr1:+:8200434..8200997
Molecular Weight (calculated) 17860.70 Da
IEP (calculated) 6.13
GRAVY (calculated) -0.27
Length 160 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQATRQSSL QGELEVDIEI KASAKKFHHM LSGRPQDVAK ATPDIQGCAL HEGEFGKVGS VIFWNYAIDG QPKVARERIE AVDQEKNLLV LRVIDGDLTK
101: EFKSFLVTIQ ATPKLRGPGS VVKCHLKYER IDEKVAPPEK LLELFAKLTE SMDEMLLSEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)