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AT1G23120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.992
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polyketide cyclase/dehydrase and lipid transport superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G70870.1); Has 405 Blast hits to 378 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 405; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JF95eggNOG:ENOG41113R7EMBL:AC002311EMBL:AK119068EMBL:BT003676EMBL:CP002684EnsemblPlants:AT1G23120
EnsemblPlants:AT1G23120.1entrez:838920Gene3D:3.30.530.20GeneID:838920GO:GO:0006952GO:GO:0009607Gramene:AT1G23120.1
hmmpanther:PTHR31338hmmpanther:PTHR31338:SF15HOGENOM:HOG000239987InterPro:IPR000916InterPro:IPR023393KEGG:ath:AT1G23120OMA:SSIQIWN
Pfam:PF00407PhylomeDB:O49305PIR:D86365Proteomes:UP000006548RefSeq:NP_173725.1SMART:SM01037SMR:O49305
STRING:3702.AT1G23120.1SUPFAM:SSF55961TAIR:AT1G23120UniGene:At.20079UniProt:O49305
Coordinates (TAIR10) chr1:+:8198788..8199359
Molecular Weight (calculated) 17323.40 Da
IEP (calculated) 4.68
GRAVY (calculated) -0.65
Length 148 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGVQTLELE IQVNMTAERF FKTFKKKEGN FTDKTEAVYV HRDDPTSNSS IQIWNFIVDG KMEQIKEKID VDEENKSVSF LALEGDVLKQ YKSYKITLDV
101: VPKDHKVCIA KWTWEYEKLN DDVPPPTRYT AFVEDYTRDL ETRLLSES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)