AT1G23060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT1G70950.1); Has 449 Blast hits to 419 proteins in 98 species: Archae - 0; Bacteria - 40; Metazoa - 139; Fungi - 21; Plants - 158; Viruses - 3; Other Eukaryotes - 88 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:8170946..8172739 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 41007.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.61 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.89 | ||||||||||||||||||||||||
| Length | 367 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGEVQDPFN LSLLENSIHS GSVSFGRFEK ESLSWERRSS FSRNIYLEEA ERFSKPGSVT QMRAHFEAHF KKKGIRFPSS VESQTWGEVV HHQTCTEKDE 101: NLWENTSQFG DSCVSFDETI LVNSDDDVHT SISVALERTD IGRIEDEKET KSSSSATRSK PLKNVQKARP YSATNKDSTK KHVVIPKGYS PSSNAKTSVD 201: TKRQKELKPK RIVETVACQA PATSKKTEIL TPLLATREKK TSTNGFSLRS NERAEKKKEE KVEAVVRKAL NLKARPLPKS TQARPQHTST GQAKAKAKAR 301: DDHSSTASCD RSLTNRMAKS KVIINKQKAD MQRSLNGIRP KTSDQTARNS TNIRSLAVRR SAVQVAL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)