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AT1G23030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.658
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G71020.1); Has 7493 Blast hits to 5002 proteins in 288 species: Archae - 0; Bacteria - 26; Metazoa - 2087; Fungi - 726; Plants - 3867; Viruses - 3; Other Eukaryotes - 784 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2481-MONOMEREC:6.3.2.-eggNOG:ENOG410ITMHeggNOG:ENOG410YBA5EMBL:AF000657EMBL:AK221923EMBL:BT002518
EMBL:CP002684EnsemblPlants:AT1G23030EnsemblPlants:AT1G23030.1entrez:838911Gene3D:1.25.10.10Gene3D:3.30.40.10GeneID:838911
Genevisible:Q8GUG9GO:GO:0004842GO:GO:0010200GO:GO:0016567GO:GO:0016874GO:GO:0051865Gramene:AT1G23030.1
hmmpanther:PTHR23315hmmpanther:PTHR23315:SF52HOGENOM:HOG000238412InParanoid:Q8GUG9InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989
InterPro:IPR013083InterPro:IPR016024KEGG:ath:AT1G23030OMA:MGSMEARPaxDb:Q8GUG9Pfam:PF00514Pfam:PF04564
Pfam:Q8GUG9Pfscan:PS50176Pfscan:PS51698PhylomeDB:Q8GUG9PIR:D86364PRIDE:Q8GUG9PRO:PR:Q8GUG9
PROSITE:PS50176PROSITE:PS51698ProteinModelPortal:Q8GUG9Proteomes:UP000006548RefSeq:NP_173716.1SMART:SM00185SMART:SM00504
SMR:Q8GUG9STRING:3702.AT1G23030.1SUPFAM:SSF48371SUPFAM:SSF57850TAIR:AT1G23030UniGene:At.41572UniGene:At.74178
UniPathway:UPA00143UniProt:Q8GUG9
Coordinates (TAIR10) chr1:+:8156745..8158842
Molecular Weight (calculated) 67359.90 Da
IEP (calculated) 7.84
GRAVY (calculated) -0.20
Length 612 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGGIVSPAS LLDLIADIVE IPLNTGMFKK DCADLTRRVC LLTHLLEEIR DSTPIDSAAS SSSENDWWSD LVVGLQAAKR LLSTARFQAR DSSDGAAKRI
101: SFQFQCVTWK LEKALSNLPY DLYDISDEVG EQVELARSQL RRAMQRYGSL NSNKFSSALS EPMERDGFSN VIKIKAEEKL ESVSETLHFG EEEEKQSSPP
201: LRRSSSISLA YYLSKDADTD RLDKMVNKNT DESKKSDKLT IPVDFLCPVS LELMKDPVIV ATGQTYERAY IQRWIDCGNL TCPKTQQKLE NFTLTPNYVL
301: RSLISRWCAE HNIEQPAGYI NGRTKNSGDM SVIRALVQRL SSRSTEDRRN AVSEIRSLSK RSTDNRILIA EAGAIPVLVN LLTSEDVATQ ENAITCVLNL
401: SIYENNKELI MFAGAVTSIV QVLRAGTMEA RENAAATLFS LSLADENKII IGGSGAIPAL VDLLENGTPR GKKDAATALF NLCIYHGNKG RAVRAGIVTA
501: LVKMLSDSTR HRMVDEALTI LSVLANNQDA KSAIVKANTL PALIGILQTD QTRNRENAAA ILLSLCKRDT EKLITIGRLG AVVPLMDLSK NGTERGKRKA
601: ISLLELLRKA CQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)