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AT1G22985.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G71130.1); Has 5644 Blast hits to 5509 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5631; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
BioGrid:24145EMBL:AF000657EMBL:AY062541EMBL:AY087064EMBL:AY093336EMBL:CP002684EnsemblPlants:AT1G22985
EnsemblPlants:AT1G22985.1entrez:838906Gene3D:3.30.730.10GeneID:838906Genevisible:Q8W4I5GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009873Gramene:AT1G22985.1hmmpanther:PTHR31194hmmpanther:PTHR31194:SF0HOGENOM:HOG000112390
InParanoid:Q8W4I5IntAct:Q8W4I5InterPro:IPR001471InterPro:IPR016177InterPro:IPR017392KEGG:ath:AT1G22985OMA:IQLIGPD
PANTHER:PTHR31194PaxDb:Q8W4I5Pfam:PF00847Pfam:Q8W4I5Pfscan:PS51032PhylomeDB:Q8W4I5PIRSF:PIRSF038123
PRIDE:Q8W4I5PRINTS:PR00367PRO:PR:Q8W4I5PROSITE:PS51032ProteinModelPortal:Q8W4I5Proteomes:UP000006548RefSeq:NP_564186.1
SMART:SM00380SMR:Q8W4I5STRING:3702.AT1G22985.1SUPFAM:SSF54171TAIR:AT1G22985UniGene:At.27304UniProt:Q8W4I5
Coordinates (TAIR10) chr1:-:8135346..8135825
Molecular Weight (calculated) 17536.70 Da
IEP (calculated) 10.33
GRAVY (calculated) -0.67
Length 159 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRIVRISFT DMEATDSSSS EDESPPSSRR RGKKLVKEIV IDHSDPPEVG KTRFKIRIPA SLLAARNTTA NKKKFRGVRQ RPWGKWAAEI RCGRVKGRPE
101: RIWLGTFETA EEAALAYDNA AIQLIGPDAP TNFGRPDVDS AVVKKQDSDA SGGASEEVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)