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AT1G22920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.572
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : COP9 signalosome 5A
Curator
Summary (TAIR10)
AJH1 encodes a protein similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Encodes a subunit of the COP9 complex that is involved in protein deneddylation. Plants with mutations in CSN5A and CSN5B have a de-etiolated phenotype.
Computational
Description (TAIR10)
COP9 signalosome 5A (CSN5A); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9-signalosome 5B (TAIR:AT1G71230.1); Has 1314 Blast hits to 1313 proteins in 252 species: Archae - 0; Bacteria - 4; Metazoa - 460; Fungi - 400; Plants - 277; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).
Protein Annotations
BioGrid:24138EC:3.4.-.-eggNOG:COG1310eggNOG:KOG1554EMBL:AF000657EMBL:AF042334EMBL:AF087413
EMBL:AF395062EMBL:AY087510EMBL:BT003909EMBL:CP002684EnsemblPlants:AT1G22920EnsemblPlants:AT1G22920.1entrez:838899
ExpressionAtlas:Q8LAZ7GeneID:838899Genevisible:Q8LAZ7GO:GO:0000338GO:GO:0005737GO:GO:0008180GO:GO:0008237
GO:GO:0009585GO:GO:0009733GO:GO:0010093GO:GO:0010100GO:GO:0010387GO:GO:0010388GO:GO:0010971
GO:GO:0031347GO:GO:0046872hmmpanther:PTHR10410hmmpanther:PTHR10410:SF6HOGENOM:HOG000116528InParanoid:Q8LAZ7IntAct:Q8LAZ7
InterPro:IPR000555iPTMnet:Q8LAZ7KEGG:ath:AT1G22920KO:K09613MEROPS:M67.A01OMA:MQEVQSIPaxDb:Q8LAZ7
Pfam:PF01398Pfam:Q8LAZ7PhylomeDB:Q8LAZ7PIR:C86363PIR:T52180PRIDE:Q8LAZ7PRO:PR:Q8LAZ7
ProteinModelPortal:Q8LAZ7Proteomes:UP000006548Reactome:R-ATH-5696394Reactome:R-ATH-6781823RefSeq:NP_173705.1SMART:SM00232SMR:Q8LAZ7
STRING:3702.AT1G22920.1SUPFAM:0048572TAIR:AT1G22920tair10-symbols:AJH1tair10-symbols:CSN5Atair10-symbols:JAB1UniGene:At.10441
UniProt:A1A6G7UniProt:Q8LAZ7
Coordinates (TAIR10) chr1:-:8109882..8111895
Molecular Weight (calculated) 39733.60 Da
IEP (calculated) 4.92
GRAVY (calculated) -0.43
Length 357 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGSSSAIAR KTWELENNIL PVEPTDSASD SIFHYDDASQ AKIQQEKPWA SDPNYFKRVH ISALALLKMV VHARSGGTIE IMGLMQGKTE GDTIIVMDAF
101: ALPVEGTETR VNAQSDAYEY MVEYSQTSKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQM LNQQYQEPFL AVVIDPTRTV SAGKVEIGAF RTYPEGHKIS
201: DDHVSEYQTI PLNKIEDFGV HCKQYYSLDI TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESQLANSRYG GIAPAGHQRR
301: KEDEPQLAKI TRDSAKITVE QVHGLMSQVI KDILFNSARQ SKKSADDSSD PEPMITS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)