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AT1G22910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G33470.2); Has 15 Blast hits to 15 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111PGTeggNOG:KOG0149EMBL:AF367334EMBL:AY058222
EMBL:CP002684EnsemblPlants:AT1G22910EnsemblPlants:AT1G22910.1entrez:838898
ExpressionAtlas:Q9ASQ8Gene3D:3.30.70.330GeneID:838898GO:GO:0000166
GO:GO:0003676Gramene:AT1G22910.1hmmpanther:PTHR24012hmmpanther:PTHR24012:SF421
HOGENOM:HOG000276232InterPro:IPR000504InterPro:IPR012677KEGG:ath:AT1G22910
Pfam:PF00076Pfscan:PS50102PhylomeDB:Q9ASQ8PROSITE:PS50102
Proteomes:UP000006548RefSeq:NP_564184.1SMART:SM00360SMR:Q9ASQ8
SUPFAM:SSF54928TAIR:AT1G22910UniGene:At.26231UniProt:Q9ASQ8
Coordinates (TAIR10) chr1:+:8105808..8107659
Molecular Weight (calculated) 26681.50 Da
IEP (calculated) 9.01
GRAVY (calculated) -0.42
Length 249 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGGIGLGDT TYTKVFVGGL AWETHKETMK KHFEQFGEIL EAVVITDKAS GRSKGYGFVT FREAEAARSA CVDATPVIDG RRANCNLASL GLQRSKPSTP
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGVTGFP LQPPLIPYR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)