suba logo
AT1G22850.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SNARE associated Golgi protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SNARE associated Golgi protein family; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT1G03260.1); Has 4604 Blast hits to 4604 proteins in 1169 species: Archae - 23; Bacteria - 2889; Metazoa - 197; Fungi - 87; Plants - 283; Viruses - 0; Other Eukaryotes - 1125 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0398eggNOG:KOG3140EMBL:AF000657EMBL:AY050329
EMBL:AY101531EMBL:CP002684EnsemblPlants:AT1G22850EnsemblPlants:AT1G22850.1
entrez:838890GeneID:838890GO:GO:0009507GO:GO:0016021
Gramene:AT1G22850.1hmmpanther:PTHR12677hmmpanther:PTHR12677:SF5HOGENOM:HOG000238542
InterPro:IPR015414InterPro:IPR032816KEGG:ath:AT1G22850OMA:FSTYIEG
PANTHER:PTHR12677Pfam:PF09335PhylomeDB:O23137PIR:D86362
Proteomes:UP000006548RefSeq:NP_564182.1STRING:3702.AT1G22850.1TAIR:AT1G22850
TMHMM:TMhelixUniGene:At.23516UniGene:At.48220UniProt:O23137
Coordinates (TAIR10) chr1:-:8080671..8082816
Molecular Weight (calculated) 36906.50 Da
IEP (calculated) 8.94
GRAVY (calculated) 0.14
Length 344 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSLTLGLTL RSSSSSSLPF TCNSRFCSPP PPSSSFRLYK RFHFLKPCSS LKQTKKKKQQ SLPSTAPPPQ SLRWFFNSKS TNDENDEDDV KSESDDDGGS
101: EGDAAIKGTI LAGVLLIGTV GGFAGVGYVY RDQINTFLTQ FSTYIEGYGT AGYALFIAVY AGLEILAIPA LPLTMSAGLL FGPLIGTIIV SISGTMAASV
201: AFLIARYFAR ERILKLVEDN KKFLAIDKAI GENGFRVVTL LRLSPLLPFS LGNYLYGLTS VKFVPYVLGS WLGMLPGSWA YVSAGAFGRA IIQEESNVGL
301: PGGNGQLLTL GVGLLVTALA GTYVTSLAKD AIKDIDDDEK RDAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)