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AT1G22840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24727099 (2014): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:21166475 (2011): cytosol
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:14671022 (2004): mitochondrion
  • PMID:12970493 (2003): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CYTOCHROME C-1
Curator
Summary (TAIR10)
Encodes cytochrome c. Contains two site II (TGGGCC/T) elements, which interact with a TCP-domain transcription factor, and a downstream internal telomeric repeat, and are required for expression of the Cytc-1 gene. Promoter directs preferential expression in root and shoot meristems and in anthers.
Computational
Description (TAIR10)
CYTOCHROME C-1 (CYTC-1); FUNCTIONS IN: electron carrier activity, copper ion binding; INVOLVED IN: cell proliferation; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c, class IA/ IB (InterPro:IPR002327), Cytochrome c, class I (InterPro:IPR003088), Cytochrome c domain (InterPro:IPR009056); BEST Arabidopsis thaliana protein match is: cytochrome c-2 (TAIR:AT4G10040.1); Has 4039 Blast hits to 4017 proteins in 749 species: Archae - 0; Bacteria - 1490; Metazoa - 642; Fungi - 252; Plants - 160; Viruses - 0; Other Eukaryotes - 1495 (source: NCBI BLink).
Protein Annotations
BioGrid:24128eggNOG:COG3474eggNOG:KOG3453EMBL:AF000657EMBL:AY062853EMBL:AY087108EMBL:AY114580
EMBL:CP002684EnsemblPlants:AT1G22840EnsemblPlants:AT1G22840.1entrez:838889ExpressionAtlas:O23138Gene3D:1.10.760.10GeneID:838889
Genevisible:O23138GO:GO:0005507GO:GO:0005739GO:GO:0005758GO:GO:0005774GO:GO:0005829GO:GO:0006122
GO:GO:0006123GO:GO:0008283GO:GO:0009055GO:GO:0020037GO:GO:0070469hmmpanther:PTHR11961hmmpanther:PTHR11961:SF8
HOGENOM:HOG000009762InParanoid:O23138IntAct:O23138InterPro:IPR002327InterPro:IPR009056OMA:HEYLRNPPANTHER:PTHR11961
PaxDb:O23138Pfam:O23138Pfam:PF00034Pfscan:PS51007PhylomeDB:O23138PIR:C86362PRIDE:O23138
PRINTS:PR00604PRO:PR:O23138PROSITE:PS51007ProteinModelPortal:O23138Proteomes:UP000006548Reactome:R-ATH-111457Reactome:R-ATH-3299685
RefSeq:NP_173697.1SMR:O23138STRING:3702.AT1G22840.1SUPFAM:SSF46626TAIR:AT1G22840tair10-symbols:ATCYTC-Atair10-symbols:CYTC-1
UniGene:At.23516UniGene:At.48220UniProt:O23138
Coordinates (TAIR10) chr1:+:8079384..8080286
Molecular Weight (calculated) 12394.70 Da
IEP (calculated) 9.78
GRAVY (calculated) -0.69
Length 114 amino acids
Sequence (TAIR10)
(BLAST)
001: MASFDEAPPG NAKAGEKIFR TKCAQCHTVE AGAGHKQGPN LNGLFGRQSG TTAGYSYSAA NKNKAVEWEE KALYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKES TAPK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)