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AT1G22830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G71490.1); Has 41595 Blast hits to 13372 proteins in 196 species: Archae - 1; Bacteria - 4; Metazoa - 55; Fungi - 60; Plants - 41015; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC003979EMBL:AF000657EMBL:AK176394EMBL:BT023467EMBL:CP002684
EnsemblPlants:AT1G22830EnsemblPlants:AT1G22830.1EnsemblPlants:AT1G22830.2entrez:838888Gene3D:1.25.40.10GeneID:838888Genevisible:Q4V389
Gramene:AT1G22830.1Gramene:AT1G22830.2hmmpanther:PTHR24015hmmpanther:PTHR24015:SF517HOGENOM:HOG000115617InParanoid:Q4V389InterPro:IPR002885
InterPro:IPR011990iPTMnet:Q4V389KEGG:ath:AT1G22830OMA:QSGSHEFPaxDb:Q4V389Pfam:PF01535Pfam:PF13041
Pfam:Q4V389Pfscan:PS51375PhylomeDB:Q4V389PIR:B86362PIR:T00762PRIDE:Q4V389PRO:PR:Q4V389
PROSITE:PS51375ProteinModelPortal:Q4V389Proteomes:UP000006548RefSeq:NP_001077582.1RefSeq:NP_173696.1SMR:Q4V389STRING:3702.AT1G22830.1
TAIR:AT1G22830TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.41583UniProt:Q4V389
Coordinates (TAIR10) chr1:+:8076921..8079032
Molecular Weight (calculated) 79319.50 Da
IEP (calculated) 7.43
GRAVY (calculated) -0.06
Length 703 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSSPSRSIL RGLTVSEICK FIPQSWKQLP RPISETSKTH DDESVPQVLF NSFRHCISHG QLYEAFRTFS LLRYQSGSHE FVLYSSASLL STCVGFNEFV
101: PGQQLHAHCI SSGLEFDSVL VPKLVTFYSA FNLLDEAQTI TENSEILHPL PWNVLIGSYI RNKRFQESVS VYKRMMSKGI RADEFTYPSV IKACAALLDF
201: AYGRVVHGSI EVSSHRCNLY VCNALISMYK RFGKVDVARR LFDRMSERDA VSWNAIINCY TSEEKLGEAF KLLDRMYLSG VEASIVTWNT IAGGCLEAGN
301: YIGALNCVVG MRNCNVRIGS VAMINGLKAC SHIGALKWGK VFHCLVIRSC SFSHDIDNVR NSLITMYSRC SDLRHAFIVF QQVEANSLST WNSIISGFAY
401: NERSEETSFL LKEMLLSGFH PNHITLASIL PLFARVGNLQ HGKEFHCYIL RRQSYKDCLI LWNSLVDMYA KSGEIIAAKR VFDSMRKRDK VTYTSLIDGY
501: GRLGKGEVAL AWFKDMDRSG IKPDHVTMVA VLSACSHSNL VREGHWLFTK MEHVFGIRLR LEHYSCMVDL YCRAGYLDKA RDIFHTIPYE PSSAMCATLL
601: KACLIHGNTN IGEWAADKLL LETKPEHLGH YMLLADMYAV TGSWSKLVTV KTLLSDLGVQ KAHEFALMET DSELDGENNK PMNDDSVINQ EQSSDEERLV
701: EVG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)