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AT1G22780.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23323832 (2013): plasma membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At1g22780
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein S13/S18 family
Curator
Summary (TAIR10)
S18 ribosomal protein involved in the binding of f-Met tRNA during initiation of mRNA translation. Expression restricted to meristems. Mutant phenotype-pointed first leaves,reduced fresh weight, growth retardation.
Computational
Description (TAIR10)
POINTED FIRST LEAVES (PFL); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleic acid binding; INVOLVED IN: translational initiation, translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, small ribosomal subunit, cell wall, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like, H2TH (InterPro:IPR010979), Ribosomal protein S13, conserved site (InterPro:IPR018269), Ribosomal protein S13 (InterPro:IPR001892); BEST Arabidopsis thaliana protein match is: S18 ribosomal protein (TAIR:AT4G09800.1); Has 7956 Blast hits to 7953 proteins in 2911 species: Archae - 236; Bacteria - 5065; Metazoa - 352; Fungi - 176; Plants - 401; Viruses - 0; Other Eukaryotes - 1726 (source: NCBI BLink).
Protein Annotations
BioGrid:11868BioGrid:24123BioGrid:25532eggNOG:COG0099eggNOG:KOG3311EMBL:AC003979EMBL:AC015446
EMBL:AC079286EMBL:AF370463EMBL:AF386941EMBL:AF411781EMBL:AL049482EMBL:AL161515EMBL:AY034965
EMBL:AY064680EMBL:AY070029EMBL:AY086334EMBL:AY086800EMBL:AY087428EMBL:BT006539EMBL:CP002684
EMBL:CP002687EMBL:Y12227EMBL:Z23165EMBL:Z28701EMBL:Z28702EMBL:Z28962EnsemblPlants:AT1G22780
EnsemblPlants:AT1G22780.1EnsemblPlants:AT1G34030.1EnsemblPlants:AT4G09800.1entrez:826569entrez:838884entrez:840300ExpressionAtlas:P34788
Gene3D:4.10.910.10GeneID:826569GeneID:838884GeneID:840300Genevisible:P34788GO:GO:0003735GO:GO:0005618
GO:GO:0005730GO:GO:0005773GO:GO:0005774GO:GO:0005829GO:GO:0005840GO:GO:0005886GO:GO:0006413
GO:GO:0009506GO:GO:0016020GO:GO:0019843GO:GO:0022626GO:GO:0022627Gramene:AT1G22780.1Gramene:AT1G34030.1
Gramene:AT4G09800.1HAMAP:MF_01315hmmpanther:PTHR10871hmmpanther:PTHR10871:SF6HOGENOM:HOG000039877InParanoid:P34788IntAct:P34788
InterPro:IPR001892InterPro:IPR010979InterPro:IPR018269InterPro:IPR027437KEGG:ath:AT1G22780KEGG:ath:AT1G34030KEGG:ath:AT4G09800
KO:K02964OMA:RIMNTDLPaxDb:P34788Pfam:P34788Pfam:PF00416Pfscan:PS50159PhylomeDB:P34788
PIR:S46223PIRSF:PIRSF002134PRIDE:P34788PRO:PR:P34788PROSITE:PS00646PROSITE:PS50159ProteinModelPortal:P34788
Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_173692.1RefSeq:NP_192718.1RefSeq:NP_564434.1scanprosite:PS00646SMR:P34788
STRING:3702.AT4G09800.1SUPFAM:SSF46946TAIR:AT1G22780TAIR:AT1G34030TAIR:AT4G09800tair10-symbols:PFLtair10-symbols:PFL1
tair10-symbols:RPS18AUniGene:At.179UniGene:At.180UniGene:At.20392UniGene:At.33672UniProt:P34788UniProt:Q5PNZ9
Coordinates (TAIR10) chr1:+:8067990..8069163
Molecular Weight (calculated) 17546.50 Da
IEP (calculated) 11.23
GRAVY (calculated) -0.68
Length 152 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLVANEEFQ HILRVLNTNV DGKQKIMFAL TSIKGIGRRL ANIVCKKADV DMNKRAGELS AAEIDNLMTI VANPRQFKIP DWFLNRQKDY KDGKYSQVVS
101: NALDMKLRDD LERLKKIRNH RGLRHYWGLR VRGQHTKTTG RRGKTVGVSK KR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)