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AT1G22760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : poly(A) binding protein 3
Curator
Summary (TAIR10)
Putative poly(A) binding protein May there fore function in posttranscriptional regulation, including mRNA turnover and translational initiation. Expression detected only in floral organs.
Computational
Description (TAIR10)
poly(A) binding protein 3 (PAB3); CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A)-binding protein 5 (TAIR:AT1G71770.2); Has 52215 Blast hits to 23458 proteins in 902 species: Archae - 22; Bacteria - 3112; Metazoa - 26727; Fungi - 6853; Plants - 9433; Viruses - 0; Other Eukaryotes - 6068 (source: NCBI BLink).
Protein Annotations
BioGrid:24121eggNOG:ENOG410XR5XeggNOG:KOG0123EMBL:AC003979
EMBL:AF293840EMBL:AY054490EMBL:CP002684EMBL:Y12227
EnsemblPlants:AT1G22760EnsemblPlants:AT1G22760.1entrez:838882Gene3D:1.10.1900.10
Gene3D:3.30.70.330GeneID:838882Genevisible:O64380GO:GO:0000166
GO:GO:0000184GO:GO:0003723GO:GO:0005634GO:GO:0005737
GO:GO:0006397GO:GO:0006417GO:GO:0060211Gramene:AT1G22760.1
hmmpanther:PTHR24012hmmpanther:PTHR24012:SF349HOGENOM:HOG000217922InParanoid:O64380
InterPro:IPR000504InterPro:IPR002004InterPro:IPR003954InterPro:IPR006515
InterPro:IPR012677KEGG:ath:AT1G22760KO:K13126ncoils:Coil
OMA:ERHEPLHPaxDb:O64380Pfam:O64380Pfam:PF00076
Pfam:PF00658Pfscan:PS50102Pfscan:PS51309PhylomeDB:O64380
PIR:T00768PRIDE:O64380PRO:PR:O64380PROSITE:PS50102
PROSITE:PS51309ProteinModelPortal:O64380Proteomes:UP000006548Reactome:R-ATH-156827
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_173690.1SMART:SM00360
SMART:SM00361SMART:SM00517SMR:O64380STRING:3702.AT1G22760.1
SUPFAM:SSF54928SUPFAM:SSF63570TAIR:AT1G22760tair10-symbols:PAB3
TIGRfam:TIGR01628TIGRFAMs:TIGR01628UniGene:At.208UniProt:O64380
Coordinates (TAIR10) chr1:+:8055599..8058799
Molecular Weight (calculated) 72877.30 Da
IEP (calculated) 8.92
GRAVY (calculated) -0.43
Length 660 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)