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AT1G22640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 3
Curator
Summary (TAIR10)
MYB-type transcription factor (MYB3) that represses phenylpropanoid biosynthesis gene expression
Computational
Description (TAIR10)
myb domain protein 3 (MYB3); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 6 (TAIR:AT4G09460.1); Has 9176 Blast hits to 8476 proteins in 489 species: Archae - 0; Bacteria - 0; Metazoa - 739; Fungi - 510; Plants - 6085; Viruses - 3; Other Eukaryotes - 1839 (source: NCBI BLink).
Protein Annotations
BioGrid:24109eggNOG:COG5147eggNOG:KOG0048EMBL:AC003979EMBL:AC006551EMBL:AF062859EMBL:AY072543
EMBL:AY519557EMBL:BT000841EMBL:CP002684EnsemblPlants:AT1G22640EnsemblPlants:AT1G22640.1entrez:838870Gene3D:1.10.10.60
GeneID:838870Genevisible:Q9S9K9GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009611
GO:GO:0009651GO:GO:0009737GO:GO:0009751GO:GO:0009800GO:GO:0009892Gramene:AT1G22640.1hmmpanther:PTHR10641
hmmpanther:PTHR10641:SF643HOGENOM:HOG000237600InParanoid:Q9S9K9IntAct:Q9S9K9InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930
KEGG:ath:AT1G22640KO:K09422OMA:CRNCRVSPaxDb:Q9S9K9Pfam:PF00249Pfam:Q9S9K9Pfscan:PS51294
PhylomeDB:Q9S9K9PIR:T00780PIR:T51631PRIDE:Q9S9K9PRO:PR:Q9S9K9PROSITE:PS51294ProteinModelPortal:Q9S9K9
Proteomes:UP000006548RefSeq:NP_564176.2SMART:SM00717SMR:Q9S9K9STRING:3702.AT1G22640.1SUPFAM:SSF46689TAIR:AT1G22640
tair10-symbols:ATMYB3tair10-symbols:MYB3UniGene:At.23277UniGene:At.67127UniProt:Q9S9K9
Coordinates (TAIR10) chr1:+:8006289..8007219
Molecular Weight (calculated) 29353.70 Da
IEP (calculated) 7.66
GRAVY (calculated) -0.70
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)