suba logo
AT1G22630.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
vacuole 0.941
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 87 Blast hits to 86 proteins in 34 species: Archae - 0; Bacteria - 13; Metazoa - 27; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0UEeggNOG:ENOG4112859EMBL:AC006551EMBL:AY045605EMBL:AY090329EMBL:CP002684EnsemblPlants:AT1G22630
EnsemblPlants:AT1G22630.1entrez:838869Gene3D:2.10.230.10GeneID:838869GO:GO:0009507Gramene:AT1G22630.1hmmpanther:PTHR15852
hmmpanther:PTHR15852:SF18HOGENOM:HOG000077683IntAct:Q9SKA5InterPro:IPR001305KEGG:ath:AT1G22630OMA:PLCCSELPhylomeDB:Q9SKA5
Proteomes:UP000006548RefSeq:NP_564175.2SMR:Q9SKA5STRING:3702.AT1G22630.1SUPFAM:SSF57938TAIR:AT1G22630UniGene:At.24666
UniProt:Q9SKA5
Coordinates (TAIR10) chr1:+:8003487..8004167
Molecular Weight (calculated) 11879.60 Da
IEP (calculated) 9.09
GRAVY (calculated) -0.39
Length 110 amino acids
Sequence (TAIR10)
(BLAST)
001: MLKFPLCCSE LSLEPKILAF ESQLVSGRRD TIKVSAGKIG NFSLGSIFKS CETCGAKGAI ECPGCKGTGK NKKNGNMFER WKCFDCQGFG MKSCPKCGKG
101: GLTPEQRGER
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)