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AT1G22600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.980
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant protein (LEA) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant protein (LEA) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, embryo, sperm cell, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT1G72100.1); Has 169 Blast hits to 166 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 72; Fungi - 8; Plants - 85; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111HFXeggNOG:KOG2886EMBL:AC006551EMBL:AY924680EMBL:CP002684EMBL:DQ132653EnsemblPlants:AT1G22600
EnsemblPlants:AT1G22600.1entrez:838866GeneID:838866GO:GO:0009506GO:GO:0016021Gramene:AT1G22600.1hmmpanther:PTHR23241
hmmpanther:PTHR23241:SF50HOGENOM:HOG000240814InterPro:IPR025423KEGG:ath:AT1G22600OMA:PGELICDPfam:PF13664PhylomeDB:Q9SKA2
PIR:E86359Proteomes:UP000006548RefSeq:NP_173674.1STRING:3702.AT1G22600.1TAIR:AT1G22600TMHMM:TMhelixUniGene:At.51726
UniProt:Q9SKA2
Coordinates (TAIR10) chr1:-:7987308..7989187
Molecular Weight (calculated) 42531.40 Da
IEP (calculated) 9.08
GRAVY (calculated) -0.19
Length 385 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKLLALSLV LSALFTVGHC TGSEDDIIVR DGHRVVVVEY DRDGETNTRV LISPPGKEVD QKSRDEGEVF GNEKRETASS LPEEEEREHH ATPGELICDA
101: IGKCKHKLGT VLGRVKDRTA SDLSDETPEM TVAREALEVE EKVSWKAREA RGKVNERATK KAHRVQKVLE KVQIAVRGIG TVVATALGLT KIGSVVGIVG
201: IAAAYGMCVW VTFVSGYVLA SVLGEQQFGV VQSKMYPVYF KAVSVGILVG LLGHVIGRRR KVFTDAVDMW QSVNLLSSIL MVEANASFVY TRATKAMFEL
301: IKAEKEDGRG FDTSDQSQSS ESAGRTRGKK KVTEKTDEDV VKQRLTKLSE RMRKLNAYSS RLNLLTLMSL TWHFVYLGYR LSLTC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)