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AT1G22530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.500
cytosol 0.500
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27335345 (2016): cytosol cell plate
  • PMID:27335345 (2016): plasma membrane
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22430844 (2012): Golgi
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16635983 (2006): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PATELLIN 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PATELLIN 2 (PATL2); FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: PATELLIN 1 (TAIR:AT1G72150.1); Has 61558 Blast hits to 35948 proteins in 2575 species: Archae - 235; Bacteria - 13717; Metazoa - 20974; Fungi - 8097; Plants - 3493; Viruses - 317; Other Eukaryotes - 14725 (source: NCBI BLink).
Protein Annotations
BioGrid:24098eggNOG:ENOG410XRSQeggNOG:KOG1471EMBL:AC006551EMBL:AK220983EMBL:AY091145EMBL:AY133810
EMBL:CP002684EnsemblPlants:AT1G22530EnsemblPlants:AT1G22530.1entrez:838859Gene3D:3.40.525.10GeneID:838859Genevisible:Q56ZI2
GO:GO:0002020GO:GO:0005215GO:GO:0005794GO:GO:0005886GO:GO:0007049GO:GO:0008289GO:GO:0009507
GO:GO:0016021GO:GO:0051301Gramene:AT1G22530.1hmmpanther:PTHR23324hmmpanther:PTHR23324:SF67HOGENOM:HOG000238518InParanoid:Q56ZI2
InterPro:IPR001071InterPro:IPR001251InterPro:IPR009038InterPro:IPR011074iPTMnet:Q56ZI2KEGG:ath:AT1G22530ncoils:Coil
OMA:QFEPSNEPaxDb:Q56ZI2Pfam:PF00650Pfam:PF03765Pfam:Q56ZI2Pfscan:PS50191Pfscan:PS50866
PhylomeDB:Q56ZI2PIR:E86358PRIDE:Q56ZI2PRINTS:PR00180PRO:PR:Q56ZI2PROSITE:PS50191PROSITE:PS50866
ProteinModelPortal:Q56ZI2Proteomes:UP000006548RefSeq:NP_173669.1SMART:SM00516SMART:SM01100SMR:Q56ZI2STRING:3702.AT1G22530.1
SUPFAM:0041713SUPFAM:SSF101576SUPFAM:SSF46938SUPFAM:SSF52087TAIR:AT1G22530tair10-symbols:PATL2UniGene:At.25355
UniProt:Q56ZI2
Coordinates (TAIR10) chr1:-:7955773..7958326
Molecular Weight (calculated) 76011.70 Da
IEP (calculated) 4.60
GRAVY (calculated) -0.53
Length 683 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQEEIQKPT ASVPVVKEET PAPVKEVEVP VTTEKAVAAP APEATEEKVV SEVAVPETEV TAVKEEEVAT GKEILQSESF KEEGYLASEL QEAEKNALAE
101: LKELVREALN KREFTAPPPP PAPVKEEKVE EKKTEETEEK KEEVKTEEKS LEAETKEEEK SAAPATVETK KEEILAAPAP IVAETKKEET PVAPAPVETK
201: PAAPVVAETK KEEILPAAPV TTETKVEEKV VPVETTPAAP VTTETKEEEK AAPVTTETKE EEKAAPGETK KEEKATASTQ VKRASKFIKD IFVSVTTSEK
301: KKEEEKPAVV TIEKAFAADQ EEETKTVEAV EESIVSITLP ETAAYVEPEE VSIWGIPLLE DERSDVILLK FLRARDFKVK EAFTMLKNTV QWRKENKIDD
401: LVSEDLEGSE FEKLVFTHGV DKQGHVVIYS SYGEFQNKEI FSDKEKLSKF LKWRIQFQEK CVRSLDFSPE AKSSFVFVSD FRNAPGLGQR ALWQFIKRAV
501: KQFEDNYPEF VAKELFINVP WWYIPYYKTF GSIITSPRTR SKMVLSGPSK SAETIFKYVA PEVVPVKYGG LSKDSPFTVE DGVTEAVVKS TSKYTIDLPA
601: TEGSTLSWEL RVLGADVSYG AQFEPSNEAS YTVIVSKNRK VGLTDEPVIT DSFKASEAGK VVITIDNQTF KKKKVLYRSK TQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)