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AT1G22500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.902
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, cotyledon, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72200.1); Has 9627 Blast hits to 9604 proteins in 288 species: Archae - 0; Bacteria - 2; Metazoa - 2532; Fungi - 813; Plants - 4919; Viruses - 76; Other Eukaryotes - 1285 (source: NCBI BLink).
Protein Annotations
BioGrid:24095EC:6.3.2.-eggNOG:ENOG41121N2eggNOG:KOG0800
EMBL:AC006551EMBL:AK226235EMBL:BT011235EMBL:BT012542
EMBL:CP002684EMBL:DQ059099EnsemblPlants:AT1G22500EnsemblPlants:AT1G22500.1
entrez:838856Gene3D:3.30.40.10GeneID:838856Genevisible:Q9SK92
GO:GO:0004842GO:GO:0008270GO:GO:0009416GO:GO:0016021
GO:GO:0016567GO:GO:0016874GO:GO:0033591Gramene:AT1G22500.1
hmmpanther:PTHR14155HOGENOM:HOG000239182InParanoid:Q9SK92InterPro:IPR001841
InterPro:IPR013083iPTMnet:Q9SK92KEGG:ath:AT1G22500KO:K10664
OMA:VAWTGNQPaxDb:Q9SK92Pfam:PF13639Pfam:Q9SK92
Pfscan:PS50089PhylomeDB:Q9SK92PIR:C86358PRIDE:Q9SK92
PRO:PR:Q9SK92PROSITE:PS50089ProteinModelPortal:Q9SK92Proteomes:UP000006548
RefSeq:NP_173666.1SMART:SM00184SMR:Q9SK92STRING:3702.AT1G22500.1
SUPFAM:SSF57850TAIR:AT1G22500TMHMM:TMhelixUniGene:At.19245
UniGene:At.63975UniGene:At.68564UniPathway:UPA00143UniProt:Q9SK92
Coordinates (TAIR10) chr1:+:7949581..7950726
Molecular Weight (calculated) 42228.20 Da
IEP (calculated) 6.37
GRAVY (calculated) -0.32
Length 381 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVMSRVSFY SSFLLLLLEV VVASSEFDDE GRTSFSPTTA IIMIVLVSVF FALGCISVYM RRCLQHALGM DSGGGPGNWL NVRQTTEPGL DASVIETFPT
101: FPYSTVKTLR IGKEALECPV CLNEFEDDET LRLIPQCCHV FHPGCIDAWL RSQTTCPLCR ANLVPVPGES VSSEIPGLAR ETGQNSLRTP IDDNRKRVLT
201: SPDERLIDSV AWTGNQSMPR KSMSTGWKLA ELYSPASSPG QPEENLDRYT LRLPQEIHDQ LVNSSLGKQG SKGQLALPQE RSSVRGFRTG SLGTEKNYFY
301: FERFDQDGRL DRRPFSITPP YHTRSIQSPD EIINASGNYQ DRAGAPKGLL LAIRSPFDRL FTGKKNAGER SYLQSGDASP V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)