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AT1G22450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24727099 (2014): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21472856 (2011): mitochondrion
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cytochrome C oxidase 6B
Curator
Summary (TAIR10)
subunit 6b of cytochrome c oxidase
Computational
Description (TAIR10)
cytochrome C oxidase 6B (COX6B); FUNCTIONS IN: cytochrome-c oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, response to salt stress; LOCATED IN: thylakoid, mitochondrion, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit VIb (InterPro:IPR003213); BEST Arabidopsis thaliana protein match is: Cytochrome c oxidase, subunit Vib family protein (TAIR:AT4G28060.1); Has 8194 Blast hits to 4240 proteins in 603 species: Archae - 36; Bacteria - 1026; Metazoa - 1662; Fungi - 831; Plants - 315; Viruses - 124; Other Eukaryotes - 4200 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G22450-MONOMERBioGrid:24090eggNOG:ENOG41121WMeggNOG:KOG3057EMBL:AB035444EMBL:AC006551EMBL:AY063997
EMBL:AY086483EMBL:AY096696EMBL:CP002684EnsemblPlants:AT1G22450EnsemblPlants:AT1G22450.1entrez:838851Gene3D:1.10.10.140
GeneID:838851Genevisible:Q9S7L9GO:GO:0004129GO:GO:0005507GO:GO:0005739GO:GO:0009507GO:GO:0009535
GO:GO:0009579GO:GO:0009651Gramene:AT1G22450.1gramene_pathway:1.9.3.1gramene_pathway:PWY-3781hmmpanther:PTHR11387hmmpanther:PTHR11387:SF15
HOGENOM:HOG000070575InParanoid:Q9S7L9IntAct:Q9S7L9InterPro:IPR003213KEGG:ath:AT1G22450KO:K02267OMA:VEYHRCT
PaxDb:Q9S7L9Pfam:PF02297Pfam:Q9S7L9PIR:F86357PRIDE:Q9S7L9PRO:PR:Q9S7L9ProteinModelPortal:Q9S7L9
Proteomes:UP000006548RefSeq:NP_173661.1SMR:Q9S7L9STRING:3702.AT1G22450.1SUPFAM:0045397SUPFAM:SSF47694TAIR:AT1G22450
tair10-symbols:ATCOX6B2tair10-symbols:COX6BUniGene:At.10491UniGene:At.67078UniProt:Q9S7L9
Coordinates (TAIR10) chr1:+:7925447..7926918
Molecular Weight (calculated) 21195.70 Da
IEP (calculated) 3.99
GRAVY (calculated) -0.96
Length 191 amino acids
Sequence (TAIR10)
(BLAST)
001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)