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AT1G22410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28611809 (2017): cytosol
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:24872594 (2014): plastid
  • PMID:22923678 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Class-II DAHP synthetase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Class-II DAHP synthetase family protein; FUNCTIONS IN: 3-deoxy-7-phosphoheptulonate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase, class II (InterPro:IPR002480); BEST Arabidopsis thaliana protein match is: 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (TAIR:AT4G39980.1); Has 3811 Blast hits to 3796 proteins in 685 species: Archae - 0; Bacteria - 1237; Metazoa - 0; Fungi - 110; Plants - 171; Viruses - 0; Other Eukaryotes - 2293 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G22410-MONOMEReggNOG:COG3200eggNOG:ENOG410IGEIEMBL:AC006551EMBL:CP002684EnsemblPlants:AT1G22410EnsemblPlants:AT1G22410.1
entrez:838847GeneID:838847GO:GO:0003849GO:GO:0009073GO:GO:0009507GO:GO:0009536GO:GO:0016020
Gramene:AT1G22410.1gramene_pathway:2.5.1.54gramene_pathway:ARO-PWY-ARAgramene_plant_reactome:1119430gramene_plant_reactome:6875266hmmpanther:PTHR21337hmmpanther:PTHR21337:SF6
HOGENOM:HOG000242917InterPro:IPR002480KEGG:00400+2.5.1.54KEGG:ath:AT1G22410KO:K01626OMA:LEMAFIIPANTHER:PTHR21337
Pfam:PF01474PhylomeDB:Q9SK84PIR:B86357Proteomes:UP000006548RefSeq:NP_173657.1SMR:Q9SK84STRING:3702.AT1G22410.1
SUPFAM:SSF51569TAIR:AT1G22410TIGRfam:TIGR01358TIGRFAMs:TIGR01358UniGene:At.27579unipathway:UPA00053UniProt:Q9SK84
Coordinates (TAIR10) chr1:+:7912120..7914742
Molecular Weight (calculated) 58329.90 Da
IEP (calculated) 8.47
GRAVY (calculated) -0.31
Length 527 amino acids
Sequence (TAIR10)
(BLAST)
001: MALMNGSMNL SSVKSSMINH RQPNFSSAVS RPTSFRISAV QTDPKTPAAS SASAATTTPA TLTKPVGVNV GKGKWAPESW RTKKALQQPD YPDLAALEAV
101: LETIEAFPPI VFAGEARLLE ERLGQAAMGE AFLLQGGDCA ESFKEFNANN IRDTFRILLQ MGAVLMFGGQ VPVVKVGRMA GQFAKPRSDS FEEKDGVKLP
201: SYRGDNINGD AFDSKSRIPD PQRMIRAYCQ SAATLNLLRA FATGGYAAMQ RVTQWNLDFT ERSEQGDRYR ELANRVDEAL GFMHAAGLTL DHPIMQTTDF
301: WTSHECLLLP YEQSLTRLDS TSGLYYDCSA HMIWVGERTR QLDGAHVEFL RGVANPLGIK VSDKMDPKEL VKLIEILNAD NKPGRITIIT RMGAENMRVK
401: LPHLIREVRR AGQIVTWVSD PMHGNTIKAP CGLKTRPFDA ILAEVRAFFD VHEQEGSHPG GIHLEMTGQN VTECIGGSRT VTFDDLGSRY HTHCDPRLNA
501: SQSLELSFII AERLRKRRIK SQKAFAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)