suba logo
AT1G22300.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : general regulatory factor 10
Curator
Summary (TAIR10)
Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1
Computational
Description (TAIR10)
general regulatory factor 10 (GRF10); FUNCTIONS IN: protein phosphorylated amino acid binding, ATP binding; INVOLVED IN: brassinosteroid mediated signaling pathway; LOCATED IN: mitochondrion, chloroplast stroma, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 11 (TAIR:AT1G34760.2); Has 2709 Blast hits to 2701 proteins in 383 species: Archae - 0; Bacteria - 0; Metazoa - 1258; Fungi - 330; Plants - 762; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink).
Protein Annotations
BioGrid:24076eggNOG:COG5040eggNOG:KOG0841EMBL:AC068562EMBL:AF145302EMBL:AF334382EMBL:AY054505
EMBL:AY058834EMBL:AY062838EMBL:AY081674EMBL:AY087580EMBL:CP002684EMBL:U36446EnsemblPlants:AT1G22300
EnsemblPlants:AT1G22300.1entrez:838837ExpressionAtlas:P48347GeneID:838837Genevisible:P48347GO:GO:0005524GO:GO:0005739
GO:GO:0005829GO:GO:0005886GO:GO:0009506GO:GO:0009737GO:GO:0009742hmmpanther:PTHR18860HOGENOM:HOG000240379
InParanoid:P48347IntAct:P48347InterPro:IPR000308InterPro:IPR023409InterPro:IPR023410iPTMnet:P48347KEGG:ath:AT1G22300
KO:K06630MINT:MINT-2584273ncoils:CoilOMA:ESKGHEQPANTHER:PTHR18860PaxDb:P48347Pfam:P48347
Pfam:PF00244PhylomeDB:P48347PIR:H86355PIRSF:PIRSF000868PRIDE:P48347PRINTS:PR00305PRO:PR:P48347
PROSITE:PS00796PROSITE:PS00797ProteinModelPortal:P48347Proteomes:UP000006548Reactome:R-ATH-3371453Reactome:R-ATH-3371511RefSeq:NP_564167.1
RefSeq:NP_849698.1scanprosite:PS00796scanprosite:PS00797SMART:SM00101SMR:P48347STRING:3702.AT1G22300.1SUPFAM:SSF48445
TAIR:AT1G22300tair10-symbols:14-3-3EPSILONtair10-symbols:GF14 EPSILONtair10-symbols:GRF10UniGene:At.24553UniGene:At.67728UniProt:P48347
Coordinates (TAIR10) chr1:-:7879146..7881103
Molecular Weight (calculated) 28916.80 Da
IEP (calculated) 4.44
GRAVY (calculated) -0.64
Length 254 amino acids
Sequence (TAIR10)
(BLAST)
001: MENEREKQVY LAKLSEQTER YDEMVEAMKK VAQLDVELTV EERNLVSVGY KNVIGARRAS WRILSSIEQK EESKGNDENV KRLKNYRKRV EDELAKVCND
101: ILSVIDKHLI PSSNAVESTV FFYKMKGDYY RYLAEFSSGA ERKEAADQSL EAYKAAVAAA ENGLAPTHPV RLGLALNFSV FYYEILNSPE SACQLAKQAF
201: DDAIAELDSL NEESYKDSTL IMQLLRDNLT LWTSDLNEEG DERTKGADEP QDEN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)