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AT1G22060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ44eggNOG:ENOG410YBHGEMBL:CP002684EnsemblPlants:AT1G22060EnsemblPlants:AT1G22060.1entrez:838811GeneID:838811
GO:GO:0005773Gramene:AT1G22060.1hmmpanther:PTHR34452hmmpanther:PTHR34452:SF1InParanoid:F4HZS8InterPro:IPR019448iPTMnet:F4HZS8
KEGG:ath:AT1G22060ncoils:CoilOMA:TEASYMRPaxDb:F4HZS8Pfam:PF10358PRIDE:F4HZS8ProteinModelPortal:F4HZS8
Proteomes:UP000006548RefSeq:NP_173625.1STRING:3702.AT1G22060.1TAIR:AT1G22060UniGene:At.15622UniGene:At.48218UniProt:F4HZS8
Coordinates (TAIR10) chr1:-:7773373..7780586
Molecular Weight (calculated) 228966.00 Da
IEP (calculated) 4.74
GRAVY (calculated) -0.60
Length 1999 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSRLAKWKLE KAKVKVVFRL QFHATHVPQA GWDKLFISFI PADSVKATAK TTKALVRNGT CKWGDPIYET TRLLQDTRTK QFDEKLYKIV VAMGTSRSSI
0101: LGEAMINLAE YADALKPFAV ILPLQGCDPG AILHVTIQLL TSKTGFREFE QQREISERGP STTPDHSSPD ESSRCRISPS DETLSHVDKT NIRGSFKEKF
0201: RDNSLVEETV GLNDLDSGLG FDVSSNTSGS LNAEKHDISS INEVDSLKSV VSGDLSGLAQ SPQKEKDSLG WQHGWGSDYL GKNSDLGNAI EDNNKLKGFL
0301: EDMESSINEI KIEVSSLQCH ADDIGSKAQD FSQILISEIG SGDHLVREVS VLKSECSKLK EEMERLRNVK SHVLFNSKDQ DNVPHSLQLR WLQGLLVVED
0401: NIREIQNKVC YGYHDRDLRL FLSDFESLLG VLQDFKTQIE QPISHFSTVP SEKIIMTDSK ERGLSKAKHF VSGSEVDTDI YQPELDPLQY LGMPDLTSRE
0501: PNSADSVSAM RDKILELVRG LDESKAERDS LTKKMDQMEC YYESLVQELE ETQRQLLVEL QSLRTEHSTC LYSISGAKAE METLRHDMNE QTLRFSEEKK
0601: TLDSFNEELD KRAMAAEAAL KRARLNYSIA VNHLQKDLEL LSSQVVSMFE TNENLIKQAF PEPPQSFHEC IQSTDDSISE KQDTRDVKLI QFQNEKKGMK
0701: ERPLKGDIIL LEDMKRSLHV QESLYQKVEE ELYEMHSRNL YLEVFSNILR ETFLEASVDI RIMKAKIDEL GWQLELSTEA KEILKQRLDI TLDEVCSLKE
0801: EKTTCIAKWN AVALQNQSLE ANLQNITHEN LILLQKIDEL ESVVLESKSW KTNYETCICE KKELAELMEK EAVEKAHYRT RLATVQAEFD AVRGKFDDLA
0901: TANGNLQQNL SSLTDKLINT LGCYNEKLVS LPQWEGVDLD FESHDLTEQL DKFLCKICEK CFVLISENNG LMKEKSMTES YLRAAESDVM ELKQMHENDV
1001: QCMVTKLEAS TALLRRLQLE TESVMDKMKV ITEDEQNYES RHLDLLSRLD HFENEMHLLV SKNEGLGQEI SELSSVAVEH GRTKLLVEEL AEEKKRVLVS
1101: LQDKSQETLG LVRELENLKK TFDHELRLER NLRQELEIKM QDLTSEVIAK SSKLMSFDEQ SSELVRLKQM VSDLELEKAT HTHRLTRYET SLRSLTRDSS
1201: YISDLESQIL EMMEISVAAD IQIVFTRTEW ETYADKLHKD HFEVLTAFND SRNVGAQHMN ANIKLLADLD SLKSELKIER NLRNNLDRRV EELTSELDEK
1301: HLLLENFDLQ KSQVELLEKM VAELESEKSF QRLEYVRNAH RESSFIEELF QCLMAADVQL IFTKIQSDIC INEFAEQLSC CSNSHLEFQK KYTDVESALN
1401: HCLVNETRYM DENNQLLINL EVLKSELESS MAKSRALADR NDEMSAELEE HATRDENAER SYSERSLCAP EVEQLKSLLF GYEEEIENLT VLKAEAEITV
1501: EILKDKLTGL CGKGASELET LKNRCSDLTQ KLSEQILKTE EFKSMSNHLK ELKDNAEAEC NRAREKADYK APLTPQQESL RIIFIKEQYD TKLQELQYQL
1601: TMSKKHGEEI LMKLQDAIDE NEARKKAESS QLKRSKELEG KILELEADRQ SVIYDKREKT TAYDMMKAEL DCSLLSLECC KEEKQKLEAI LQQCKEQSLK
1701: MSKELESRRG LVQRCSSQKN IEMEENDRLN SEVSELADKN TIAVSSGDSV NNGQREVACI DPTVRIISPR SIIQGTIQSS SVNGNRDQLP SGEAMALDKR
1801: EESLALINDK FRAETLRSSM DHLNDELERM KNENLLEPQD DNDSDTRFPG LEQELMQLRQ AKEELQSIFP LSQENFSCGN ALERVLALEI ELAEALRGKK
1901: KSTTHFQSSF LKQHTDDEAI FQSFRDINNL IEEMLDTKGR YSSMETELRE MHDRYSQLSL KFAEVEGERQ KLMMTLKNVR ASKKAMLLNR SSSATLGEH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)