AT1G22060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7773373..7780586 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 228966.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.74 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||
| Length | 1999 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSRLAKWKLE KAKVKVVFRL QFHATHVPQA GWDKLFISFI PADSVKATAK TTKALVRNGT CKWGDPIYET TRLLQDTRTK QFDEKLYKIV VAMGTSRSSI 0101: LGEAMINLAE YADALKPFAV ILPLQGCDPG AILHVTIQLL TSKTGFREFE QQREISERGP STTPDHSSPD ESSRCRISPS DETLSHVDKT NIRGSFKEKF 0201: RDNSLVEETV GLNDLDSGLG FDVSSNTSGS LNAEKHDISS INEVDSLKSV VSGDLSGLAQ SPQKEKDSLG WQHGWGSDYL GKNSDLGNAI EDNNKLKGFL 0301: EDMESSINEI KIEVSSLQCH ADDIGSKAQD FSQILISEIG SGDHLVREVS VLKSECSKLK EEMERLRNVK SHVLFNSKDQ DNVPHSLQLR WLQGLLVVED 0401: NIREIQNKVC YGYHDRDLRL FLSDFESLLG VLQDFKTQIE QPISHFSTVP SEKIIMTDSK ERGLSKAKHF VSGSEVDTDI YQPELDPLQY LGMPDLTSRE 0501: PNSADSVSAM RDKILELVRG LDESKAERDS LTKKMDQMEC YYESLVQELE ETQRQLLVEL QSLRTEHSTC LYSISGAKAE METLRHDMNE QTLRFSEEKK 0601: TLDSFNEELD KRAMAAEAAL KRARLNYSIA VNHLQKDLEL LSSQVVSMFE TNENLIKQAF PEPPQSFHEC IQSTDDSISE KQDTRDVKLI QFQNEKKGMK 0701: ERPLKGDIIL LEDMKRSLHV QESLYQKVEE ELYEMHSRNL YLEVFSNILR ETFLEASVDI RIMKAKIDEL GWQLELSTEA KEILKQRLDI TLDEVCSLKE 0801: EKTTCIAKWN AVALQNQSLE ANLQNITHEN LILLQKIDEL ESVVLESKSW KTNYETCICE KKELAELMEK EAVEKAHYRT RLATVQAEFD AVRGKFDDLA 0901: TANGNLQQNL SSLTDKLINT LGCYNEKLVS LPQWEGVDLD FESHDLTEQL DKFLCKICEK CFVLISENNG LMKEKSMTES YLRAAESDVM ELKQMHENDV 1001: QCMVTKLEAS TALLRRLQLE TESVMDKMKV ITEDEQNYES RHLDLLSRLD HFENEMHLLV SKNEGLGQEI SELSSVAVEH GRTKLLVEEL AEEKKRVLVS 1101: LQDKSQETLG LVRELENLKK TFDHELRLER NLRQELEIKM QDLTSEVIAK SSKLMSFDEQ SSELVRLKQM VSDLELEKAT HTHRLTRYET SLRSLTRDSS 1201: YISDLESQIL EMMEISVAAD IQIVFTRTEW ETYADKLHKD HFEVLTAFND SRNVGAQHMN ANIKLLADLD SLKSELKIER NLRNNLDRRV EELTSELDEK 1301: HLLLENFDLQ KSQVELLEKM VAELESEKSF QRLEYVRNAH RESSFIEELF QCLMAADVQL IFTKIQSDIC INEFAEQLSC CSNSHLEFQK KYTDVESALN 1401: HCLVNETRYM DENNQLLINL EVLKSELESS MAKSRALADR NDEMSAELEE HATRDENAER SYSERSLCAP EVEQLKSLLF GYEEEIENLT VLKAEAEITV 1501: EILKDKLTGL CGKGASELET LKNRCSDLTQ KLSEQILKTE EFKSMSNHLK ELKDNAEAEC NRAREKADYK APLTPQQESL RIIFIKEQYD TKLQELQYQL 1601: TMSKKHGEEI LMKLQDAIDE NEARKKAESS QLKRSKELEG KILELEADRQ SVIYDKREKT TAYDMMKAEL DCSLLSLECC KEEKQKLEAI LQQCKEQSLK 1701: MSKELESRRG LVQRCSSQKN IEMEENDRLN SEVSELADKN TIAVSSGDSV NNGQREVACI DPTVRIISPR SIIQGTIQSS SVNGNRDQLP SGEAMALDKR 1801: EESLALINDK FRAETLRSSM DHLNDELERM KNENLLEPQD DNDSDTRFPG LEQELMQLRQ AKEELQSIFP LSQENFSCGN ALERVLALEI ELAEALRGKK 1901: KSTTHFQSSF LKQHTDDEAI FQSFRDINNL IEEMLDTKGR YSSMETELRE MHDRYSQLSL KFAEVEGERQ KLMMTLKNVR ASKKAMLLNR SSSATLGEH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)