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AT1G22040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.976
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G55270.1); Has 10813 Blast hits to 5578 proteins in 328 species: Archae - 18; Bacteria - 659; Metazoa - 8206; Fungi - 35; Plants - 1449; Viruses - 72; Other Eukaryotes - 374 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AC069252EMBL:BT023422
EMBL:BT025319EMBL:CP002684EnsemblPlants:AT1G22040EnsemblPlants:AT1G22040.1
entrez:838809Gene3D:2.130.10.80GeneID:838809Genevisible:Q9LM55
Gramene:AT1G22040.1hmmpanther:PTHR24414hmmpanther:PTHR24414:SF39HOGENOM:HOG000243393
InParanoid:Q9LM55InterPro:IPR001810InterPro:IPR006652InterPro:IPR015916
KEGG:ath:AT1G22040OMA:KMVSQAWPaxDb:Q9LM55Pfam:PF01344
Pfam:PF12937Pfam:Q9LM55Pfscan:PS50181PhylomeDB:Q9LM55
PRIDE:Q9LM55PRO:PR:Q9LM55PROSITE:PS50181ProteinModelPortal:Q9LM55
Proteomes:UP000006548RefSeq:NP_173623.1SMART:SM00256SMART:SM00612
SMR:Q9LM55STRING:3702.AT1G22040.1SUPFAM:0052715SUPFAM:SSF81383
TAIR:AT1G22040UniGene:At.41625UniProt:Q9LM55
Coordinates (TAIR10) chr1:+:7768370..7769797
Molecular Weight (calculated) 52536.60 Da
IEP (calculated) 6.66
GRAVY (calculated) -0.21
Length 475 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSVMSLSCS KRKATSQDVE CSSESRKRRK ISSENDEEEC CRLIPSLPDE LSIQILARLP RICYSSVRLV SRRWRSAVST SEVYSLRKEL GRTEEWLYVL
101: TKGHEDKLLW YALDPVSTKW QRLPPMPVVV YEEESRKSLS GLWNMITPSF NVGAIVRSFL GRRDSSEQMP FCGCAIGAVD GGLYVIGGLS RSKTVSCVWR
201: FDPILNSWSE VSSMLASRAY SKTGVLNKKL YVVGGVDRGR GGLSPLQSAE VYDPSTDAWS EVPSMPFSKA QVLPNAFLAD LLKPIATGMT CYNGRLCVPQ
301: SLYSWPFFVD VGGEVYDPET NLWVEMPSGM GEGWPARQAG TKLSVVVDGE LYAFDPSSSM ENGKIKVYDQ KEDTWKVVIG EVPVYDLTDS ESPYLLAGFH
401: GKLHFITRDP NHNVTVLRAD VPNIPVSSSS SSSSSVSIPH LKTNAPNKSD TVTWKLIATK DFGAAELVSC QVIDI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)