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AT1G21890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.926
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nodulin MtN21 /EamA-like transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; EXPRESSED IN: inflorescence meristem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT4G08300.1); Has 3248 Blast hits to 3226 proteins in 574 species: Archae - 30; Bacteria - 1576; Metazoa - 4; Fungi - 0; Plants - 1228; Viruses - 0; Other Eukaryotes - 410 (source: NCBI BLink).
Protein Annotations
BioGrid:24030eggNOG:ENOG410ITDVeggNOG:ENOG410YBPNEMBL:AC013482EMBL:AY065236EMBL:AY133841EMBL:CP002684
EnsemblPlants:AT1G21890EnsemblPlants:AT1G21890.1entrez:838791GeneID:838791Genevisible:F4HZQ7GO:GO:0003333GO:GO:0005886
GO:GO:0015171GO:GO:0016021GO:GO:0032973GO:GO:0043090GO:GO:0080144Gramene:AT1G21890.1hmmpanther:PTHR31218
hmmpanther:PTHR31218:SF12HOGENOM:HOG000237441InParanoid:F4HZQ7InterPro:IPR000620InterPro:IPR030184KEGG:ath:AT1G21890OMA:FHERKIR
PANTHER:PTHR31218PaxDb:F4HZQ7Pfam:F4HZQ7Pfam:PF00892PRIDE:F4HZQ7PRO:PR:F4HZQ7ProteinModelPortal:F4HZQ7
Proteomes:UP000006548RefSeq:NP_173607.1STRING:3702.AT1G21890.1SUPFAM:0043518TAIR:AT1G21890TMHMM:TMhelixUniGene:At.25611
UniGene:At.48217UniProt:F4HZQ7
Coordinates (TAIR10) chr1:-:7682808..7685581
Molecular Weight (calculated) 41717.70 Da
IEP (calculated) 9.57
GRAVY (calculated) 0.50
Length 389 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRGLMNSLK PYLAMISMQF GYAGMYIITM VSLKHGMNHY VLAVYRHAIA TAVIAPFALF HERKIRPKMT FRIFLQIALL GFIEPVLDQN LYYVGMTYTS
101: ATFASATANV LPAITFVLAI IFRLESVNFK KVRSIAKVVG TVITVSGALL MTLYKGPIVD FIRFGGGGGG GSDGAGGSHG GAGAAAMDKH WIPGTLMLLG
201: RTFGWAGFFI LQSFTLKQYP AELSLTTLIC LMGTLEGTAV SLVTVRDLSA WKIGFDSNLF AAAYSGVICS GVAYYVQGVV MRERGPVFVA TFNPLCVVIT
301: AALGVVVLSE SIHLGSVIGT LFIIVGLYTV VWGKGKDKRM TDDDEDCKGL PIKSPVKPVD TGKGLAAELE MKSKEGQEAK ATTTTQVEI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)