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AT1G21880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
SwissProt : extracellular 16381842
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 12805588
TAIR : plasma membrane 17644812
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:21109274 (2011): extracellular region
  • PMID:17644812 (2007): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:12805588 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : lysm domain GPI-anchored protein 1 precursor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
lysm domain GPI-anchored protein 1 precursor (LYM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); BEST Arabidopsis thaliana protein match is: Peptidoglycan-binding LysM domain-containing protein (TAIR:AT1G77630.1); Has 655 Blast hits to 634 proteins in 130 species: Archae - 0; Bacteria - 234; Metazoa - 0; Fungi - 1; Plants - 403; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT1G21880EnsemblPlants:AT1G21880.1entrez:838790hmmpanther:PTHR33734hmmpanther:PTHR33734:SF3Pfam:PF01476tair10-symbols:LYM1
TMHMM:TMhelix
Coordinates (TAIR10) chr1:+:7680689..7682048
Molecular Weight (calculated) 33403.10 Da
IEP (calculated) 4.58
GRAVY (calculated) 0.33
Length 316 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIPEKPIFL IFVSLILASS LTFTATAKST IEPCSSNDTC NALLGYTLYT DLKVSEVASL FQVDPISILL ANAIDISYPD VENHILPSKL FLKIPITCSC
101: VDGIRKSVST HYKTRPSDNL GSIADSVYGG LVSAEQIQEA NSVNDPSLLD VGTSLVIPLP CACFNGTDNS LPAVYLSYVV KEIDTLVGIA RRYSTTITDL
201: MNVNAMGAPD VSSGDILAVP LSACASKFPR YASDFGLIVP NGSYALAAGH CVQCSCALGS RNLYCEPASL AVSCSSMQCR NSNLMLGNIT VQQTSAGCNV
301: TTCDYNGIAN GTILTM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)