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AT1G21830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.921
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44608.1); Has 49 Blast hits to 49 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZ5VeggNOG:ENOG410YK28EMBL:AK221015EMBL:AK221109EMBL:AK221756EMBL:AK221999EMBL:AK222145
EMBL:AK229746EMBL:AK230028EMBL:AY072453EMBL:AY086995EMBL:BT006258EMBL:CP002684EnsemblPlants:AT1G21830
EnsemblPlants:AT1G21830.1entrez:838785GeneID:838785Gramene:AT1G21830.1hmmpanther:PTHR35995InterPro:IPR008004KEGG:ath:AT1G21830
OMA:FHPKEVVPfam:PF05340PhylomeDB:Q8VY47Proteomes:UP000006548RefSeq:NP_173601.2TAIR:AT1G21830UniGene:At.11474
UniProt:Q8VY47
Coordinates (TAIR10) chr1:-:7661429..7662521
Molecular Weight (calculated) 23276.70 Da
IEP (calculated) 10.60
GRAVY (calculated) -0.69
Length 206 amino acids
Sequence (TAIR10)
(BLAST)
001: MDMYKDDSSP YCYFHPKEEY VGVCPLCLNE RLLVLASKQR SSRTKHSSSS PIISLPKIFA LSSLLSRLDL RHRKFHPSSD LDVSTSQEDS FISIKFENDG
101: NASWEKKAVV TKVCVDNNNN NTTNSTCKKQ QSPITSNTSI VEHNSAKSSL RWRKRIGHLF HVIKLKSGSS TSSCHVAPSK VEGTKVRKQG WMVRTLTRKK
201: SRKSKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)