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AT1G21700.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SWITCH/sucrose nonfermenting 3C
Curator
Summary (TAIR10)
a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3A, the other two members of the SWI3 family. Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Referred to as CHB3 in Zhou et al (2003).
Computational
Description (TAIR10)
SWITCH/sucrose nonfermenting 3C (SWI3C); FUNCTIONS IN: DNA binding; INVOLVED IN: chromatin remodeling; LOCATED IN: SWI/SNF complex, chromatin remodeling complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT4G34430.3); Has 4703 Blast hits to 3623 proteins in 273 species: Archae - 0; Bacteria - 43; Metazoa - 1892; Fungi - 779; Plants - 380; Viruses - 2; Other Eukaryotes - 1607 (source: NCBI BLink).
Protein Annotations
BioGrid:24013DIP:DIP-37816NeggNOG:COG5259eggNOG:KOG1279EMBL:AC007727EMBL:AY091026EMBL:AY117245
EMBL:CP002684EnsemblPlants:AT1G21700EnsemblPlants:AT1G21700.1entrez:838774Gene3D:1.10.10.10Gene3D:1.10.10.60GeneID:838774
Genevisible:Q9XI07GO:GO:0003677GO:GO:0006338GO:GO:0006351GO:GO:0006355GO:GO:0007275GO:GO:0016514
Gramene:AT1G21700.1hmmpanther:PTHR12802hmmpanther:PTHR12802:SF41HOGENOM:HOG000243996InParanoid:Q9XI07IntAct:Q9XI07InterPro:IPR001005
InterPro:IPR007526InterPro:IPR009057InterPro:IPR011991InterPro:IPR017884InterPro:IPR032451KEGG:ath:AT1G21700KO:K11649
ncoils:CoilOMA:CEQVERVPaxDb:Q9XI07Pfam:PF00249Pfam:PF04433Pfam:PF16495Pfam:Q9XI07
Pfscan:PS50934Pfscan:PS51293PhylomeDB:Q9XI07PIR:D86350PRIDE:Q9XI07PRO:PR:Q9XI07PROSITE:PS50934
PROSITE:PS51293ProteinModelPortal:Q9XI07Proteomes:UP000006548RefSeq:NP_173589.1SMART:SM00717SMR:Q9XI07STRING:3702.AT1G21700.1
SUPFAM:SSF46689TAIR:AT1G21700tair10-symbols:ATSWI3Ctair10-symbols:CHB4tair10-symbols:SWI3CUniGene:At.41645UniProt:Q9XI07
Coordinates (TAIR10) chr1:-:7620156..7623978
Molecular Weight (calculated) 88255.00 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.57
Length 807 amino acids
Sequence (TAIR10)
(BLAST)
001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)