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AT1G21680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DPP6 N-terminal domain-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DPP6 N-terminal domain-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21670.1); Has 9463 Blast hits to 5353 proteins in 1263 species: Archae - 75; Bacteria - 6165; Metazoa - 47; Fungi - 60; Plants - 122; Viruses - 0; Other Eukaryotes - 2994 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0823eggNOG:ENOG410IK31EMBL:AC007727EMBL:AY046036EMBL:AY142688EMBL:CP002684EnsemblPlants:AT1G21680
EnsemblPlants:AT1G21680.1entrez:838770Gene3D:2.130.10.10GeneID:838770GO:GO:0005773GO:GO:0005774GO:GO:0009505
Gramene:AT1G21680.1hmmpanther:PTHR32161hmmpanther:PTHR32161:SF8HOGENOM:HOG000240011InterPro:IPR011659InterPro:IPR015943KEGG:ath:AT1G21680
OMA:YVSTHESPfam:PF07676PhylomeDB:Q9XI10PIR:A86350Proteomes:UP000006548RefSeq:NP_564147.1SMR:Q9XI10
STRING:3702.AT1G21680.1SUPFAM:0039879SUPFAM:SSF82171TAIR:AT1G21680UniGene:At.20376UniProt:Q9XI10
Coordinates (TAIR10) chr1:+:7613028..7615148
Molecular Weight (calculated) 78445.70 Da
IEP (calculated) 6.77
GRAVY (calculated) -0.44
Length 706 amino acids
Sequence (TAIR10)
(BLAST)
001: MNISQIIFFA SLLLRLHLST AEHQNSNAGD GDTIIFTTLG RSHYEFDIFA LSTTQPPSVS GELRITDGES VNFNGYFPSP SPALLSLLPD ETLIQMEDSS
101: PLHLIYVTER NGTSSLYYDL VYGGNSDFKT KRRSVLEAPS RVQVPLLSRF DHLSGMTVNS FKDKPSLSGE FIVYVSTHES SGEPRASWTA VYSTELKTGL
201: TRRLTPSGVA DFSPAVSPSG NLTAVASYGE RGWTGEVEEL RTDIYVFLTR DGSHRVKVVE HGGWPCWVDE STLYFHRRSE EDGWISVYRA ILPENGPLTT
301: ESVTIQRVTP PGVHAFTPAT SPNNHEFVAV ATRRPGSDYR HVELFDLKRN EFIELTRLVA PKSHHLNPFL SPDSSRVGYH SCRGDANGRR SPLLFLENIQ
401: TTTRDLSLFR IDGSFPSFSP GGDRIAYVKM PGVFVVKPDG SGQREVYKGM AFSTAWDPVR PGIVYSSSGP TFATERTEVD VISIDVDAAD KSSSVRRLTT
501: NGKNNAFPWP SPDGKRIVFR SGRTGHKNLY IMDAEKGESG GLWRLTEGAW TDTMCNWSPD GEWIAFASDR ESPGSGSFEL FLIHPNGTGL RKLIQSGTGG
601: RTNHPIFSPD SKSLVFTSDY AGISAEPISN PHHYQPYGDI FTVKLDGSNV RRLTHNSYED GTPAWAPRFI HPNNVELQRR NDSRCSFEDC HWLNKYPTLK
701: GRKISC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)