AT1G21680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DPP6 N-terminal domain-like protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DPP6 N-terminal domain-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21670.1); Has 9463 Blast hits to 5353 proteins in 1263 species: Archae - 75; Bacteria - 6165; Metazoa - 47; Fungi - 60; Plants - 122; Viruses - 0; Other Eukaryotes - 2994 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:7613028..7615148 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78445.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.77 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||
| Length | 706 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNISQIIFFA SLLLRLHLST AEHQNSNAGD GDTIIFTTLG RSHYEFDIFA LSTTQPPSVS GELRITDGES VNFNGYFPSP SPALLSLLPD ETLIQMEDSS 101: PLHLIYVTER NGTSSLYYDL VYGGNSDFKT KRRSVLEAPS RVQVPLLSRF DHLSGMTVNS FKDKPSLSGE FIVYVSTHES SGEPRASWTA VYSTELKTGL 201: TRRLTPSGVA DFSPAVSPSG NLTAVASYGE RGWTGEVEEL RTDIYVFLTR DGSHRVKVVE HGGWPCWVDE STLYFHRRSE EDGWISVYRA ILPENGPLTT 301: ESVTIQRVTP PGVHAFTPAT SPNNHEFVAV ATRRPGSDYR HVELFDLKRN EFIELTRLVA PKSHHLNPFL SPDSSRVGYH SCRGDANGRR SPLLFLENIQ 401: TTTRDLSLFR IDGSFPSFSP GGDRIAYVKM PGVFVVKPDG SGQREVYKGM AFSTAWDPVR PGIVYSSSGP TFATERTEVD VISIDVDAAD KSSSVRRLTT 501: NGKNNAFPWP SPDGKRIVFR SGRTGHKNLY IMDAEKGESG GLWRLTEGAW TDTMCNWSPD GEWIAFASDR ESPGSGSFEL FLIHPNGTGL RKLIQSGTGG 601: RTNHPIFSPD SKSLVFTSDY AGISAEPISN PHHYQPYGDI FTVKLDGSNV RRLTHNSYED GTPAWAPRFI HPNNVELQRR NDSRCSFEDC HWLNKYPTLK 701: GRKISC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)