AT1G21670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: DPP6 N-terminal domain-like protein (TAIR:AT1G21680.1); Has 8461 Blast hits to 5060 proteins in 1257 species: Archae - 79; Bacteria - 5567; Metazoa - 37; Fungi - 70; Plants - 117; Viruses - 0; Other Eukaryotes - 2591 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:7610409..7612520 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77292.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.78 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||
| Length | 703 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKLTNALFFF FLICLLSLSS ASSNKPQLSN GSTILFTTIG RPTFEFDIFT LPTSHRPPSP ADEHRLTDGK SINFNGYFAS PSTALISLLP KRTQIQPQDV 101: HLIYVTERAG TPSLNYDVVH SDNVGSRIQV PLFSGEEQQS GMNVNSMKDT PVLTNGYLVH VSTHENPGKP MASWAAVYST ELRTKSTRRL TPLGIADFSP 201: AVSPSGKWTA VASFGEKGWT WSMVEKEISS DVYVFLTQDG TQRVKVVEQG GWPRWVDDST LYFHRKSDDG WISVYRAILP KTGPVTTKSV TIQRVTPPGL 301: HAFTPATSPN NNNFIAVATR RPGSEIRHVE LFDLKKNEFV ELTRLVSPKS HHFNPFLSPD SSRVGYHSCR GDATGRKTPR NLLQSLKTTS NDLSLFRFDG 401: AFPSISPEGD RFAFVSFTGV FVVNPDGSGL RQLLPQMGFG TVWDPIRHGI VYTSSGPALA PGKSQIDILA INVDAPSPAT AVKKLTTTGE NNAFPWPSPD 501: GKRIVFRSAR SGTKNLYIMD AEKGESGGLF RLTNGNWNDT IATWSPDGNW IVFASNREFP GTLLMNIYVV HPDGTGLRKL AQNLTGLVSM HPMFSPDSKR 601: IVFTTIYAGI SAEQIGNPHF NVPSSEIFTV NLDGSGLTRL THNSVEDGPP MWFPKIKATG DVAWPKRFGP SCSIQDFKTQ NTTVKMKMNK PATMSSMCVV 701: PSQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)