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AT1G21650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:21433285 (2011): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Preprotein translocase SecA family protein
Curator
Summary (TAIR10)
Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid. Loss-of-function mutations result in arrest at the globular stage and embryo lethality.
Computational
Description (TAIR10)
Preprotein translocase SecA family protein; FUNCTIONS IN: ATPase activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity, ATP binding; INVOLVED IN: intracellular protein transport, protein targeting, protein transport by the Sec complex, protein import; LOCATED IN: internal side of plasma membrane, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecA, preprotein translocase (InterPro:IPR022491), SecA motor DEAD (InterPro:IPR014018), SecA Wing/Scaffold (InterPro:IPR011116), SecA preprotein, cross-linking domain (InterPro:IPR011130), SecA conserved site (InterPro:IPR020937), SecA DEAD-like (InterPro:IPR011115), SecA protein (InterPro:IPR000185); BEST Arabidopsis thaliana protein match is: Albino or Glassy Yellow 1 (TAIR:AT4G01800.1); Has 21976 Blast hits to 13078 proteins in 2820 species: Archae - 0; Bacteria - 13647; Metazoa - 53; Fungi - 1; Plants - 97; Viruses - 0; Other Eukaryotes - 8178 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT1G21650EnsemblPlants:AT1G21650.1entrez:838767hmmpanther:PTHR30612hmmpanther:PTHR30612:SF5Pfam:PF01043Pfam:PF07516
Pfam:PF07517Pfscan:PS51196scanprosite:PS01312tair10-symbols:SECA2TIGRfam:TIGR00963
Coordinates (TAIR10) chr1:-:7592891..7600590
Molecular Weight (calculated) 118939.00 Da
IEP (calculated) 6.45
GRAVY (calculated) -0.30
Length 1051 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGSVSNLVSP NICHPAPPCL TSRSNKFPWT KPISGLLFYR SVTPIKRCHL VRRSCVVSAS LTGNLGRLKR NVQDFTSMNY WVVRDYYRLV ESVNSLEPQI
0101: QSLSDEQLKA KTAEFRERLA RGESLADMQA EAFAVVREAA KRTIGMRHFD VQIIGGGVLH DGSIAEMKTG EGKTLVSTLA AYLNALTGEG VHVVTVNDYL
0201: AQRDAEWMGR VHRFLGLSVG LIQRGMKAEE RKFNYSCDIT YTNNSELGFD YLRDNLTSNR EQLVMRWPKP FHFAIVDEVD SVLIDEGRNP LLISGEANEN
0301: AARYPVAAKV AELLVKDSHY KVELKENSVE LTEEGISLAE MALETGDLWD ENDPWARFVM NALKAKEFYK RDVQYIVRDG KALIINELTG RVEDKRRWSE
0401: GVHQAVEAKE GLEIQADSIV VAQITYQSLF KLYPKLSGMT GTAKTEEKEF LKMFQIPVIE VPTNLSNIRI DLPIQAFATA RGKWEHVRRE VEDMFGQGRP
0501: VLVGTTSVEN SEYLSELLKE WGIPHNVLNA RPKYAAREAD FIAQAGRKYA ITISTNMAGR GTDIILGGNP KMLAREIIED SILSYLTSEV LADNIDDDEL
0601: SQKVLSKIKV GPSSLALLAR ASLMAKYVGK SESKSWTRKK AKSVVTESLE KSQTMDPMEL QNLINEQSEM YPLGPAIALA YLSVLKDCEA HCLHEGSEVK
0701: RLGGLHVIGT SLHESRRIDN QLRGRAGRQG DPGSTRFMIS LQDEMFQKFN FDTEWAVRLI SKITNDEDLP IEGDTIVKQL LALQINAEKY FFGIRKSLVE
0801: FDEVLEVQRK HVYDLRQLLL TGENESCSQH IFQYMQAVVD EIVVGNSNPQ KHPRYWSLAK LLKEFMAISG NLLDEETMLQ SLENLHEGSS IEMEDLSLPH
0901: LPKPPNAFRG IRRKNSSLRR WLDICSDNLT GSGSYRTLIN LLRKFLGDYL IASYLNVVQE SGFDDGYIKE IERAVLLKTL DCYWRDHLVN MNKLSSAVNV
1001: RSFAHRNPLE EYKIDGCRFF ISMLSATRRL TVESILQYWS SPMESQELFI S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)