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AT1G21600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plastid transcriptionally active 6
Curator
Summary (TAIR10)
Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.
Computational
Description (TAIR10)
plastid transcriptionally active 6 (PTAC6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of transcription, DNA-dependent, transcription from plastid promoter; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE52eggNOG:ENOG4111M9UEMBL:AC007727EMBL:AF324715EMBL:AF326894EMBL:AF446886EMBL:AK317001
EMBL:AY052666EMBL:AY113873EMBL:CP002684EnsemblPlants:AT1G21600EnsemblPlants:AT1G21600.1EnsemblPlants:AT1G21600.2entrez:838761
GeneID:838761GO:GO:0009295GO:GO:0009507GO:GO:0009508GO:GO:0042793GO:GO:0045893Gramene:AT1G21600.1
Gramene:AT1G21600.2hmmpanther:PTHR35994HOGENOM:HOG000005688IntAct:Q9XI19KEGG:ath:AT1G21600MINT:MINT-8360715OMA:GWDSEKI
PhylomeDB:Q9XI19PIR:H86348Proteomes:UP000006548RefSeq:NP_001031076.1RefSeq:NP_564144.1STRING:3702.AT1G21600.1TAIR:AT1G21600
tair10-symbols:PTAC6UniGene:At.21218UniProt:Q9XI19
Coordinates (TAIR10) chr1:-:7571514..7573782
Molecular Weight (calculated) 37378.70 Da
IEP (calculated) 4.60
GRAVY (calculated) -0.63
Length 328 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSAASPSL SLLSFTSKPP YPSGSQRLFA SFRTDGLFAP LTLKSRRGRG IVVKVDDVDA DGGGADEYDM DDEEVEEVDN KKDYDVEYDP LAAAIAAAGG
101: GGDGDIAFVQ SKSFISTQGW DSDMVVDYRI NEDEFHKLSL MDCDFFIRKP PDPDNDVYDF REMYVTPPDT DIYSIPRVLA PMPQKYIRCA MSDYGCYNVT
201: EPPIDAPRDP LYKSEREISK VFLTKHYRNR RTNDPEFVLD LEEIYVIDSK TKSITRARVL VTVPGGRKRD RKDDLLVIRD NGTSFKIIHV GERDDPTTVI
301: EREEWTKTRE DMEKHLRKLR DFSVSNWF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)