AT1G21540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AMP-dependent synthetase and ligase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G21530.2); Has 76629 Blast hits to 70171 proteins in 3593 species: Archae - 1132; Bacteria - 50179; Metazoa - 3309; Fungi - 3660; Plants - 2281; Viruses - 1; Other Eukaryotes - 16067 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7548758..7550521 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60637.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.98 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 550 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELLLPHPSN STPLTVLGFL DRAASVYGDC PSILHTTNTV HTWSETHNRC LRIASALTSS SLGINRGQVV SVVGPNVPSV YELQFAVPMS GAILNNINPR 101: LDAHALSVLL RHSESKLVFV DPNSISVVLE AVSFMRQNEK PHLVLLDDDQ EDGSLSPSAA SDFLDTYQGV MERGDSRFKW IRPQTEWQPM ILNYTSGTTS 201: SPKGVVLSHR AIFMLTVSSL LDWHFPNRPV YLWTLPMFHA NGWGYTWGTA AVGATNVCTR RVDAPTIYDL IDKHHVTHMC AAPMVLNMLT NYPSRKPLKN 301: PVQVMTAGAP PPAAIISRAE TLGFNVGHGY GLTETGGPVV SCAWKAEWDH LDPLERARLK SRQGVRTIGF AEVDVRDPRT GKSVEHDGVS VGEIVLKGGS 401: VMLGYYKDPE GTAACMREDG WFYSGDVGVI HEDGYLEVKD RSKDVIICGG ENISSAEVET VLYTNPVVKE AAVVAKPDKM WGETPCAFVS LKYDSNGNGL 501: VTEREIREFC KTRLPKYMVP RKVIFQEELP KTSTGKIQKF LLRQMAKSLP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)