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AT1G21480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Exostosin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Exostosin family protein; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: FRA8 homolog (TAIR:AT5G22940.1); Has 1205 Blast hits to 1196 proteins in 102 species: Archae - 0; Bacteria - 8; Metazoa - 259; Fungi - 4; Plants - 850; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XTFHeggNOG:KOG1021EMBL:CP002684EMBL:KJ138996
EnsemblPlants:AT1G21480EnsemblPlants:AT1G21480.1entrez:838746ExpressionAtlas:F4HY10
GeneID:838746GO:GO:0005768GO:GO:0005794GO:GO:0005802
GO:GO:0016740Gramene:AT1G21480.1hmmpanther:PTHR11062hmmpanther:PTHR11062:SF44
InterPro:IPR004263KEGG:ath:AT1G21480OMA:GRNHIFVPfam:PF03016
Proteomes:UP000006548RefSeq:NP_564141.1STRING:3702.AT1G21480.1SwissPalm:F4HY10
TAIR:AT1G21480UniGene:At.41654UniProt:F4HY10
Coordinates (TAIR10) chr1:-:7519116..7521426
Molecular Weight (calculated) 52838.30 Da
IEP (calculated) 9.73
GRAVY (calculated) -0.34
Length 462 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLTSNKPR NFGAYSHYAT PCTRTHQIGA LFLVVSTFFV TRLFDQWFSE SNSVTPVIDL RRTSSSYGIK TDNGIIRWPE RGYGSHLSLK IYVYDENEID
101: GLKELLYGRD GSVKTTACLK GQWGSQVKIH KLLLESKFRT IKKDEADLFF VPAYVKCVRM LGGLNDKEIN QTYVKVLSQM PYFRRSGGRD HIFVFPSGAG
201: AHLFRSWSTF INRSIILTPE ADRTDKKDTT AFNSWKDIII PGNVDDAMTK NGQPDVQPLP LSKRKYLANY LGRAQGKAGR LKLIDLSKQF PDKLECPDLK
301: FSGTEKFGRT TYFEHLRNAK FCLAPRGESS WTLRFYESFF VECVPVLLSD HAELPFQNVI DYAQVSIKWP STRIGSEFLD YLASISDRDI EGMIARGRKI
401: RCLFVYGPDS APCSAVKGIL WELQRKVRHF QQSTETFWLH NGSFVNRELV QFSSWRPPMP LP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)