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AT1G21410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.993
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like superfamily protein
Curator
Summary (TAIR10)
AtSKP2;1 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes.
Computational
Description (TAIR10)
SKP2A; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT1G77000.2); Has 8874 Blast hits to 3879 proteins in 263 species: Archae - 0; Bacteria - 386; Metazoa - 3510; Fungi - 1080; Plants - 2969; Viruses - 9; Other Eukaryotes - 920 (source: NCBI BLink).
Protein Annotations
BioGrid:23979eggNOG:ENOG410IT1SeggNOG:ENOG41103D0EMBL:AC015447EMBL:AY058081EMBL:AY085898EMBL:AY090308
EMBL:CP002684EnsemblPlants:AT1G21410EnsemblPlants:AT1G21410.1entrez:838740Gene3D:3.80.10.10GeneID:838740Genevisible:Q9LPL4
GO:GO:0004842GO:GO:0005634GO:GO:0009734GO:GO:0010311GO:GO:0016567GO:GO:0019005GO:GO:0031146
GO:GO:0051781GO:GO:0071365Gramene:AT1G21410.1hmmpanther:PTHR24006HOGENOM:HOG000238537InParanoid:Q9LPL4IntAct:Q9LPL4
InterPro:IPR001611InterPro:IPR001810InterPro:IPR006553InterPro:IPR032675KEGG:ath:AT1G21410KO:K03875OMA:MGGEASM
PaxDb:Q9LPL4Pfam:PF00646Pfam:PF13516Pfam:Q9LPL4PhylomeDB:Q9LPL4PIR:B86347PRIDE:Q9LPL4
PRO:PR:Q9LPL4ProteinModelPortal:Q9LPL4Proteomes:UP000006548RefSeq:NP_564139.1SMART:SM00367SMR:Q9LPL4STRING:3702.AT1G21410.1
SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT1G21410tair10-symbols:SKP2AUniGene:At.25230UniPathway:UPA00143UniProt:Q9LPL4
Coordinates (TAIR10) chr1:+:7497479..7499386
Molecular Weight (calculated) 39616.10 Da
IEP (calculated) 7.33
GRAVY (calculated) 0.02
Length 360 amino acids
Sequence (TAIR10)
(BLAST)
001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)