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AT1G21200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sequence-specific DNA binding transcription factors
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
sequence-specific DNA binding transcription factors; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76870.1); Has 317 Blast hits to 297 proteins in 56 species: Archae - 2; Bacteria - 28; Metazoa - 67; Fungi - 2; Plants - 135; Viruses - 9; Other Eukaryotes - 74 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVR0eggNOG:ENOG410Y9ACEMBL:AC036104EMBL:AY045850EMBL:AY091378EMBL:CP002684EnsemblPlants:AT1G21200
EnsemblPlants:AT1G21200.1entrez:838715GeneID:838715GO:GO:0003700GO:GO:0006355Gramene:AT1G21200.1hmmpanther:PTHR21654
hmmpanther:PTHR21654:SF11HOGENOM:HOG000239147IntAct:Q9LMN5KEGG:ath:AT1G21200ncoils:CoilOMA:HPSIHEGPfam:PF13837
PhylomeDB:Q9LMN5PIR:C86345Proteomes:UP000006548RefSeq:NP_564136.1SMR:Q9LMN5STRING:3702.AT1G21200.1TAIR:AT1G21200
UniGene:At.15543UniProt:Q9LMN5
Coordinates (TAIR10) chr1:+:7421483..7422814
Molecular Weight (calculated) 50936.20 Da
IEP (calculated) 6.29
GRAVY (calculated) -1.15
Length 443 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGNFPQGGV VRSGASSYGG FDLQGSMRVH HQDSMNQQHR HNPNSRPLHE GLPFTMVTGQ TCDHHQNQNM SMSEQQKAER EKNSVSDDDE PSFTEEGGDG
101: VHNEANRSTK GSPWQRVKWT DKMVKLLITA VSYIGDDSSI DSSSRRKFAV LQKKGKWKSV SKVMAERGYH VSPQQCEDKF NDLNKRYKKL NDMLGRGTSC
201: QVVENPALLD SIGYLNDKEK DDVRKIMSSK HLFYEEMCSY HNGNRLHLPH DLALQRSLQL ALRSRDDHDN DDSRKHQMED LDDEDHDGDG DEHDEYEEQH
301: YAYGDCRVNH YGGGGGPLKK IRPSLSHEDG DHPSHVNSLE CNKVSLPQIP FSQADVNQGG AESGRAGSVQ KQWMESRTLQ LEEQKLQIQV ELLELEKQRF
401: RWQRFSKKRD QELERMRMEN ERMKLENDRM GLELKQRELG VEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)