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AT1G21140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Vacuolar iron transporter (VIT) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Vacuolar iron transporter (VIT) family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: Vacuolar iron transporter (VIT) family protein (TAIR:AT3G43660.1); Has 1867 Blast hits to 1856 proteins in 645 species: Archae - 60; Bacteria - 1279; Metazoa - 0; Fungi - 103; Plants - 211; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).
Protein Annotations
BioGrid:23949eggNOG:COG1814eggNOG:KOG4473EMBL:AC012190EMBL:BT003829EMBL:BT005130EMBL:CP002684
EnsemblPlants:AT1G21140EnsemblPlants:AT1G21140.1entrez:838710GeneID:838710Genevisible:Q9LPU9GO:GO:0005381GO:GO:0005384
GO:GO:0005774GO:GO:0006880GO:GO:0010039GO:GO:0016020GO:GO:0016021GO:GO:0030026GO:GO:0034755
GO:GO:0071281GO:GO:0071369GO:GO:0071421GO:GO:0071732Gramene:AT1G21140.1hmmpanther:PTHR31851hmmpanther:PTHR31851:SF15
HOGENOM:HOG000096548InParanoid:Q9LPU9IntAct:Q9LPU9InterPro:IPR008217KEGG:ath:AT1G21140OMA:TKLIGTHPaxDb:Q9LPU9
Pfam:PF01988Pfam:Q9LPU9PhylomeDB:Q9LPU9PIR:F86344PRIDE:Q9LPU9PRO:PR:Q9LPU9ProteinModelPortal:Q9LPU9
Proteomes:UP000006548RefSeq:NP_173538.2STRING:3702.AT1G21140.1TAIR:AT1G21140TCDB:2.A.89.3.3TMHMM:TMhelixUniGene:At.41673
UniProt:Q9LPU9
Coordinates (TAIR10) chr1:+:7404464..7405066
Molecular Weight (calculated) 21031.00 Da
IEP (calculated) 8.46
GRAVY (calculated) 0.52
Length 200 amino acids
Sequence (TAIR10)
(BLAST)
001: MESHNVSNSL NLDMEMDQEK AFDYSKRAQW LRAAVLGAND GLVSTASLMM GVGAVKQDVK VMILSGFAGL VAGACSMAIG EFVSVYSQYD IEVAQMKREN
101: GGQVEKEKLP SPMQAAAASA LAFSLGAIVP LMAAAFVKDY HVRIGAIVAA VTLALVMFGW LGAVLGKAPV FKSSARVLIG GWLAMAVTFG LTKLIGTHSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)