AT1G21080.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : DNAJ heat shock N-terminal domain-containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G76700.1); Has 22938 Blast hits to 22804 proteins in 3197 species: Archae - 169; Bacteria - 9211; Metazoa - 3964; Fungi - 2251; Plants - 2330; Viruses - 17; Other Eukaryotes - 4996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:7378822..7382275 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43926.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.14 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||||||||||
| Length | 391 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVKETEFYDV LGVSPTATEA EIKKAYYIKA RQVHPDKNPN DPQAAHNFQV LGEAYQVLSD PGQRQAYDTS GKSGISTEII DPAAIFAMLF GSELFEEYIG 101: QLAMASMASL DIFTEGDQID TKKIIEKMRA VQKEREDKLA QILKDRLNLY MTNKDEFTSN AEAEVTRLSN AAYGVEMLNT IGYIYVRQAA KELGKKAIYL 201: GVPFVAEWFR TKGHFIKSQV TAATGAYALF QLQEEMKRQL SAEGNYTEKE LEEYMKTHKK VMIDSLWKLN VADIESTISR VCEQVLQDPT AKREELRARA 301: KGLKTLGKIF QKNKIASESD PLVRAELHKL NGNGQEHDHS STSPKSDEAS RSTVGPQEPQ SPYVEAPKLG EEQINYYFPR PAPPPGAQRH S |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)