suba logo
AT1G21000.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.757
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PLATZ transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLATZ transcription factor family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT1G76590.1); Has 403 Blast hits to 403 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 403; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIEZeggNOG:ENOG410YCUAEMBL:AF375404EMBL:AF428392EMBL:AY129471EMBL:CP002684EnsemblPlants:AT1G21000
EnsemblPlants:AT1G21000.1entrez:838694ExpressionAtlas:Q93V70GeneID:838694Gramene:AT1G21000.1hmmpanther:PTHR31065hmmpanther:PTHR31065:SF12
IntAct:Q93V70InterPro:IPR006734OMA:KLGGMQWPfam:PF04640PhylomeDB:Q93V70Proteomes:UP000006548RefSeq:NP_564128.1
STRING:3702.AT1G21000.1TAIR:AT1G21000UniGene:At.21086UniProt:Q93V70
Coordinates (TAIR10) chr1:+:7337919..7339088
Molecular Weight (calculated) 27630.00 Da
IEP (calculated) 8.79
GRAVY (calculated) -0.48
Length 246 amino acids
Sequence (TAIR10)
(BLAST)
001: MGPMIRTEEE EDYTSPPWLM PMLRGSYFVP CSIHVDSNKN ECNLFCLDCA GNAFCSYCLV KHKDHRVVQI RRSSYHNVVR VNEIQKFIDI ACVQTYIINS
101: AKIVFLNERP QPRIGKGVTN TCEICCRSLL DSFRFCSLGC KLGGMRRGDL SLTFSLKGKH GREYLGGSES DEATTPTKMR KTNAFNRLMS GLSISTVRFD
201: DYGPNGDQRS SSSGDEGGFS FSPGTPPIYN HRNSSRRKGV PHRAPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)